Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF142 and GFF143 overlap by 18 nucleotides GFF143 and GFF144 overlap by 4 nucleotides
GFF142 - Oxidoreductase, at 170,605 to 171,657
GFF142
GFF143 - Dethiobiotin synthase BioD (EC 6.3.3.3), at 171,640 to 172,386
GFF143
GFF144 - 8-amino-7-oxononanoate synthase (EC 2.3.1.47), at 172,383 to 173,621
GFF144
Position (kb) 171
172
173 Strain fitness (log2 ratio) -2
-1
0
1 at 170.789 kb on - strand, within GFF142 at 171.076 kb on + strand, within GFF142 at 171.077 kb on - strand, within GFF142 at 171.077 kb on - strand, within GFF142 at 171.077 kb on - strand, within GFF142 at 171.077 kb on - strand, within GFF142 at 171.173 kb on - strand, within GFF142 at 171.173 kb on - strand, within GFF142 at 171.173 kb on - strand, within GFF142 at 171.173 kb on - strand, within GFF142 at 171.175 kb on + strand, within GFF142 at 171.175 kb on + strand, within GFF142 at 171.175 kb on + strand, within GFF142 at 171.175 kb on + strand, within GFF142 at 171.175 kb on + strand, within GFF142 at 171.175 kb on + strand, within GFF142 at 171.175 kb on + strand, within GFF142 at 171.175 kb on + strand, within GFF142 at 171.176 kb on - strand, within GFF142 at 171.176 kb on - strand, within GFF142 at 171.176 kb on - strand, within GFF142 at 171.176 kb on - strand, within GFF142 at 171.176 kb on - strand, within GFF142 at 171.176 kb on - strand, within GFF142 at 171.176 kb on - strand, within GFF142 at 171.176 kb on - strand, within GFF142 at 171.176 kb on - strand, within GFF142 at 171.176 kb on - strand, within GFF142 at 171.176 kb on - strand, within GFF142 at 171.364 kb on + strand, within GFF142 at 171.365 kb on - strand, within GFF142 at 171.583 kb on + strand at 172.160 kb on + strand, within GFF143 at 172.160 kb on + strand, within GFF143 at 172.161 kb on - strand, within GFF143 at 172.798 kb on + strand, within GFF144 at 172.798 kb on + strand, within GFF144 at 172.798 kb on + strand, within GFF144 at 172.799 kb on - strand, within GFF144 at 172.822 kb on + strand, within GFF144 at 172.822 kb on + strand, within GFF144 at 173.037 kb on + strand, within GFF144 at 173.037 kb on + strand, within GFF144 at 173.038 kb on - strand, within GFF144 at 173.038 kb on - strand, within GFF144 at 173.038 kb on - strand, within GFF144 at 173.140 kb on + strand, within GFF144 at 173.262 kb on - strand, within GFF144 at 173.263 kb on + strand, within GFF144 at 173.263 kb on + strand, within GFF144 at 173.264 kb on - strand, within GFF144 at 173.264 kb on - strand, within GFF144 at 173.264 kb on - strand, within GFF144 at 173.264 kb on - strand, within GFF144 at 173.264 kb on - strand, within GFF144
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 170,789 - GFF142 0.17 +0.2 171,076 + GFF142 0.45 -0.8 171,077 - GFF142 0.45 -0.6 171,077 - GFF142 0.45 -0.6 171,077 - GFF142 0.45 +0.3 171,077 - GFF142 0.45 -1.1 171,173 - GFF142 0.54 +0.5 171,173 - GFF142 0.54 -0.6 171,173 - GFF142 0.54 -2.1 171,173 - GFF142 0.54 -0.7 171,175 + GFF142 0.54 -0.8 171,175 + GFF142 0.54 -0.0 171,175 + GFF142 0.54 +1.2 171,175 + GFF142 0.54 -0.8 171,175 + GFF142 0.54 -0.6 171,175 + GFF142 0.54 -0.3 171,175 + GFF142 0.54 -0.9 171,175 + GFF142 0.54 +0.1 171,176 - GFF142 0.54 -0.0 171,176 - GFF142 0.54 -0.6 171,176 - GFF142 0.54 +0.2 171,176 - GFF142 0.54 -0.4 171,176 - GFF142 0.54 -0.7 171,176 - GFF142 0.54 +1.2 171,176 - GFF142 0.54 -0.1 171,176 - GFF142 0.54 -1.6 171,176 - GFF142 0.54 -0.4 171,176 - GFF142 0.54 -1.0 171,176 - GFF142 0.54 -0.4 171,364 + GFF142 0.72 +0.6 171,365 - GFF142 0.72 -0.1 171,583 + +0.7 172,160 + GFF143 0.70 -0.6 172,160 + GFF143 0.70 -1.5 172,161 - GFF143 0.70 -1.8 172,798 + GFF144 0.33 -0.4 172,798 + GFF144 0.33 +0.1 172,798 + GFF144 0.33 -0.7 172,799 - GFF144 0.34 +0.2 172,822 + GFF144 0.35 +0.4 172,822 + GFF144 0.35 +0.7 173,037 + GFF144 0.53 +0.1 173,037 + GFF144 0.53 +0.7 173,038 - GFF144 0.53 +0.0 173,038 - GFF144 0.53 -2.3 173,038 - GFF144 0.53 -0.1 173,140 + GFF144 0.61 +1.2 173,262 - GFF144 0.71 +0.2 173,263 + GFF144 0.71 -0.2 173,263 + GFF144 0.71 -0.0 173,264 - GFF144 0.71 -0.4 173,264 - GFF144 0.71 -1.4 173,264 - GFF144 0.71 -0.6 173,264 - GFF144 0.71 -1.4 173,264 - GFF144 0.71 -0.3
Or see this region's nucleotide sequence