Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1427 and GFF1428 overlap by 4 nucleotides GFF1428 and GFF1429 are separated by 126 nucleotides GFF1429 and GFF1430 are separated by 116 nucleotides
GFF1427 - Mandelate racemase (EC 5.1.2.2), at 17,712 to 18,788
GFF1427
GFF1428 - no description, at 18,785 to 18,940
GFF1428
GFF1429 - no description, at 19,067 to 19,438
GFF1429
GFF1430 - hypothetical protein, at 19,555 to 21,840
GFF1430
Position (kb) 19
20 Strain fitness (log2 ratio) -1
0
1
2
3 at 18.436 kb on + strand, within GFF1427 at 18.600 kb on - strand, within GFF1427 at 18.970 kb on + strand at 18.971 kb on - strand at 18.971 kb on - strand at 18.971 kb on - strand at 19.222 kb on - strand, within GFF1429 at 19.222 kb on - strand, within GFF1429 at 19.305 kb on + strand, within GFF1429 at 19.305 kb on + strand, within GFF1429 at 19.608 kb on + strand at 19.609 kb on - strand at 19.609 kb on - strand at 19.609 kb on - strand at 19.698 kb on - strand at 19.698 kb on - strand at 19.698 kb on - strand at 19.850 kb on + strand, within GFF1430 at 19.851 kb on - strand, within GFF1430 at 19.851 kb on - strand, within GFF1430 at 19.856 kb on + strand, within GFF1430 at 19.935 kb on - strand, within GFF1430 at 19.960 kb on + strand, within GFF1430 at 19.978 kb on + strand, within GFF1430 at 20.073 kb on + strand, within GFF1430 at 20.074 kb on - strand, within GFF1430 at 20.074 kb on - strand, within GFF1430 at 20.075 kb on + strand, within GFF1430 at 20.075 kb on + strand, within GFF1430 at 20.076 kb on - strand, within GFF1430 at 20.076 kb on - strand, within GFF1430 at 20.321 kb on + strand, within GFF1430 at 20.322 kb on - strand, within GFF1430 at 20.357 kb on + strand, within GFF1430 at 20.357 kb on + strand, within GFF1430 at 20.358 kb on - strand, within GFF1430 at 20.364 kb on - strand, within GFF1430 at 20.364 kb on - strand, within GFF1430 at 20.414 kb on + strand, within GFF1430 at 20.415 kb on - strand, within GFF1430 at 20.415 kb on - strand, within GFF1430
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 18,436 + GFF1427 0.67 -0.4 18,600 - GFF1427 0.82 +0.3 18,970 + -0.9 18,971 - -0.1 18,971 - -0.7 18,971 - +0.6 19,222 - GFF1429 0.42 +0.7 19,222 - GFF1429 0.42 +0.5 19,305 + GFF1429 0.64 +3.7 19,305 + GFF1429 0.64 +2.0 19,608 + +0.0 19,609 - +0.1 19,609 - -0.8 19,609 - -0.3 19,698 - -0.1 19,698 - +1.5 19,698 - +0.0 19,850 + GFF1430 0.13 -0.3 19,851 - GFF1430 0.13 -0.6 19,851 - GFF1430 0.13 -0.1 19,856 + GFF1430 0.13 -0.3 19,935 - GFF1430 0.17 -0.1 19,960 + GFF1430 0.18 +0.5 19,978 + GFF1430 0.19 +0.2 20,073 + GFF1430 0.23 -0.5 20,074 - GFF1430 0.23 -0.4 20,074 - GFF1430 0.23 +0.3 20,075 + GFF1430 0.23 +0.4 20,075 + GFF1430 0.23 -0.8 20,076 - GFF1430 0.23 -0.0 20,076 - GFF1430 0.23 -0.7 20,321 + GFF1430 0.34 +0.7 20,322 - GFF1430 0.34 -1.3 20,357 + GFF1430 0.35 +0.1 20,357 + GFF1430 0.35 -0.2 20,358 - GFF1430 0.35 -0.2 20,364 - GFF1430 0.35 -0.6 20,364 - GFF1430 0.35 +0.5 20,414 + GFF1430 0.38 -0.2 20,415 - GFF1430 0.38 -0.1 20,415 - GFF1430 0.38 -1.1
Or see this region's nucleotide sequence