Strain Fitness in Variovorax sp. SCN45 around GFF1421

Experiment: Community=Locust bean gum; Passage=1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=1
11,277	-		GFF1420	0.50	+0.9
11,623	+		GFF1420	0.73	-1.0
11,623	+		GFF1420	0.73	-0.6
11,623	+		GFF1420	0.73	+1.3
11,623	+		GFF1420	0.73	+0.4
11,624	-		GFF1420	0.73	-0.5
11,694	-		GFF1420	0.77	+1.7
12,255	+		GFF1421	0.15	-0.4
12,255	+		GFF1421	0.15	+0.5
12,255	+		GFF1421	0.15	+0.7
12,256	-		GFF1421	0.15	+0.4
12,256	-		GFF1421	0.15	-0.2
12,256	-		GFF1421	0.15	-0.4
12,804	+		GFF1421	0.62	+1.2
12,804	+		GFF1421	0.62	-1.3
12,804	+		GFF1421	0.62	-0.1
12,896	+		GFF1421	0.70	+0.8
12,976	-		GFF1421	0.77	+0.1
12,987	+		GFF1421	0.78	+0.9
13,149	+				-0.6
13,337	+				-0.1
13,830	+		GFF1422	0.48	-0.4