Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1376 and GFF1377 are separated by 45 nucleotides GFF1377 and GFF1378 are separated by 31 nucleotides GFF1378 and GFF1379 are separated by 82 nucleotides
GFF1376 - hypothetical protein, at 722,623 to 723,789
GFF1376
GFF1377 - Phosphohydrolase (MutT/nudix family protein), at 723,835 to 724,458
GFF1377
GFF1378 - no description, at 724,490 to 724,816
GFF1378
GFF1379 - Uncharacterized MFS-type transporter, at 724,899 to 726,197
GFF1379
Position (kb) 723
724
725 Strain fitness (log2 ratio) -2
-1
0
1
2 at 722.842 kb on + strand, within GFF1376 at 722.843 kb on - strand, within GFF1376 at 722.843 kb on - strand, within GFF1376 at 722.911 kb on + strand, within GFF1376 at 722.911 kb on + strand, within GFF1376 at 723.304 kb on + strand, within GFF1376 at 723.304 kb on + strand, within GFF1376 at 723.304 kb on + strand, within GFF1376 at 723.305 kb on - strand, within GFF1376 at 723.694 kb on + strand at 723.694 kb on + strand at 723.695 kb on - strand at 723.695 kb on - strand at 723.695 kb on - strand at 723.928 kb on + strand, within GFF1377 at 723.928 kb on + strand, within GFF1377 at 723.928 kb on + strand, within GFF1377 at 723.929 kb on - strand, within GFF1377 at 724.332 kb on - strand, within GFF1377 at 724.414 kb on + strand at 724.415 kb on - strand at 724.415 kb on - strand at 724.453 kb on + strand at 724.454 kb on - strand at 724.579 kb on + strand, within GFF1378 at 724.580 kb on - strand, within GFF1378 at 724.794 kb on + strand at 724.794 kb on + strand at 724.795 kb on - strand at 724.828 kb on - strand at 724.993 kb on + strand at 725.006 kb on - strand at 725.059 kb on + strand, within GFF1379 at 725.060 kb on - strand, within GFF1379 at 725.060 kb on - strand, within GFF1379 at 725.428 kb on + strand, within GFF1379 at 725.452 kb on + strand, within GFF1379
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 722,842 + GFF1376 0.19 -0.2 722,843 - GFF1376 0.19 +2.5 722,843 - GFF1376 0.19 -0.8 722,911 + GFF1376 0.25 +0.4 722,911 + GFF1376 0.25 -0.3 723,304 + GFF1376 0.58 -1.0 723,304 + GFF1376 0.58 +0.0 723,304 + GFF1376 0.58 -0.6 723,305 - GFF1376 0.58 -0.3 723,694 + -1.0 723,694 + -0.5 723,695 - -0.2 723,695 - -0.5 723,695 - -2.2 723,928 + GFF1377 0.15 -0.5 723,928 + GFF1377 0.15 -0.5 723,928 + GFF1377 0.15 -1.7 723,929 - GFF1377 0.15 +0.1 724,332 - GFF1377 0.80 -0.7 724,414 + -0.4 724,415 - -0.1 724,415 - -0.2 724,453 + +0.2 724,454 - -0.5 724,579 + GFF1378 0.27 +0.7 724,580 - GFF1378 0.28 +0.4 724,794 + -1.0 724,794 + +0.1 724,795 - -0.4 724,828 - +0.0 724,993 + -0.1 725,006 - -0.2 725,059 + GFF1379 0.12 +0.6 725,060 - GFF1379 0.12 -0.4 725,060 - GFF1379 0.12 +0.3 725,428 + GFF1379 0.41 -0.7 725,452 + GFF1379 0.43 +0.1
Or see this region's nucleotide sequence