Strain Fitness in Variovorax sp. SCN45 around GFF137

Experiment: Community=Locust bean gum; Passage=1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF136 and GFF137 are separated by 56 nucleotidesGFF137 and GFF138 are separated by 135 nucleotidesGFF138 and GFF139 are separated by 16 nucleotides GFF136 - Uncharacterized MFS-type transporter, at 164,031 to 165,458 GFF136 GFF137 - Transcriptional regulator PA4174, LysR family, at 165,515 to 166,492 GFF137 GFF138 - RidA/YER057c/UK114 superfamily, group 7, YjgH-like protein, at 166,628 to 167,032 GFF138 GFF139 - Cyclopropane-fatty-acyl-phospholipid synthase (EC 2.1.1.79), at 167,049 to 168,284 GFF139 Position (kb) 165 166 167Strain fitness (log2 ratio) -2 -1 0 1 2 3at 164.659 kb on + strand, within GFF136at 164.659 kb on + strand, within GFF136at 164.659 kb on + strand, within GFF136at 164.659 kb on + strand, within GFF136at 164.659 kb on + strand, within GFF136at 164.659 kb on - strand, within GFF136at 164.660 kb on - strand, within GFF136at 164.660 kb on - strand, within GFF136at 164.660 kb on - strand, within GFF136at 164.965 kb on + strand, within GFF136at 164.966 kb on - strand, within GFF136at 165.090 kb on + strand, within GFF136at 165.090 kb on + strand, within GFF136at 165.090 kb on + strand, within GFF136at 165.091 kb on - strand, within GFF136at 165.103 kb on + strand, within GFF136at 165.136 kb on + strand, within GFF136at 165.301 kb on + strand, within GFF136at 165.302 kb on - strand, within GFF136at 165.376 kb on + strandat 165.376 kb on + strandat 165.376 kb on + strandat 165.377 kb on - strandat 165.532 kb on + strandat 165.532 kb on + strandat 165.532 kb on + strandat 165.532 kb on + strandat 165.533 kb on - strandat 165.533 kb on - strandat 165.533 kb on - strandat 165.533 kb on - strandat 165.534 kb on + strandat 165.534 kb on + strandat 165.534 kb on + strandat 165.535 kb on - strandat 165.673 kb on - strand, within GFF137at 165.750 kb on + strand, within GFF137at 165.750 kb on + strand, within GFF137at 165.750 kb on + strand, within GFF137at 165.750 kb on + strand, within GFF137at 165.750 kb on + strand, within GFF137at 165.750 kb on + strand, within GFF137at 165.751 kb on - strand, within GFF137at 165.751 kb on - strand, within GFF137at 165.828 kb on + strand, within GFF137at 165.829 kb on - strand, within GFF137at 165.880 kb on - strand, within GFF137at 165.880 kb on - strand, within GFF137at 165.981 kb on + strand, within GFF137at 165.981 kb on + strand, within GFF137at 165.982 kb on - strand, within GFF137at 165.982 kb on - strand, within GFF137at 165.997 kb on - strand, within GFF137at 165.997 kb on - strand, within GFF137at 166.004 kb on + strand, within GFF137at 166.296 kb on + strand, within GFF137at 166.296 kb on + strand, within GFF137at 166.297 kb on - strand, within GFF137at 166.297 kb on - strand, within GFF137at 166.299 kb on + strand, within GFF137at 166.299 kb on + strand, within GFF137at 166.300 kb on - strand, within GFF137at 166.300 kb on - strand, within GFF137at 166.582 kb on + strandat 166.582 kb on + strandat 166.582 kb on + strandat 166.582 kb on + strandat 166.583 kb on - strandat 166.583 kb on - strandat 166.583 kb on - strandat 166.583 kb on - strandat 166.673 kb on + strand, within GFF138at 166.673 kb on + strand, within GFF138at 166.674 kb on - strand, within GFF138at 167.083 kb on + strandat 167.083 kb on + strandat 167.083 kb on + strandat 167.083 kb on + strandat 167.083 kb on + strandat 167.084 kb on - strandat 167.084 kb on - strandat 167.084 kb on - strandat 167.084 kb on - strandat 167.084 kb on - strandat 167.084 kb on - strandat 167.084 kb on - strandat 167.089 kb on + strandat 167.089 kb on + strandat 167.089 kb on + strandat 167.089 kb on + strandat 167.089 kb on + strandat 167.090 kb on - strandat 167.149 kb on + strandat 167.150 kb on - strandat 167.150 kb on - strandat 167.179 kb on + strand, within GFF139at 167.179 kb on + strand, within GFF139at 167.179 kb on + strand, within GFF139at 167.179 kb on + strand, within GFF139at 167.180 kb on - strand, within GFF139at 167.197 kb on + strand, within GFF139at 167.197 kb on + strand, within GFF139at 167.264 kb on - strand, within GFF139at 167.398 kb on + strand, within GFF139at 167.398 kb on + strand, within GFF139at 167.398 kb on + strand, within GFF139at 167.398 kb on + strand, within GFF139at 167.399 kb on - strand, within GFF139at 167.425 kb on + strand, within GFF139

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1
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164,659 + GFF136 0.44 -0.8
164,659 + GFF136 0.44 -0.1
164,659 + GFF136 0.44 -1.6
164,659 + GFF136 0.44 +0.1
164,659 + GFF136 0.44 -0.5
164,659 - GFF136 0.44 -0.4
164,660 - GFF136 0.44 +0.2
164,660 - GFF136 0.44 -0.2
164,660 - GFF136 0.44 -0.5
164,965 + GFF136 0.65 -0.2
164,966 - GFF136 0.65 -0.6
165,090 + GFF136 0.74 +0.2
165,090 + GFF136 0.74 +0.1
165,090 + GFF136 0.74 +0.2
165,091 - GFF136 0.74 -0.4
165,103 + GFF136 0.75 -0.3
165,136 + GFF136 0.77 -1.1
165,301 + GFF136 0.89 -0.2
165,302 - GFF136 0.89 -0.2
165,376 + -0.7
165,376 + +0.0
165,376 + -0.4
165,377 - -1.6
165,532 + -1.6
165,532 + -0.4
165,532 + -0.8
165,532 + -0.6
165,533 - -0.0
165,533 - -1.7
165,533 - -0.3
165,533 - +1.2
165,534 + +1.2
165,534 + -0.8
165,534 + -0.4
165,535 - -0.2
165,673 - GFF137 0.16 +0.1
165,750 + GFF137 0.24 -0.4
165,750 + GFF137 0.24 -1.7
165,750 + GFF137 0.24 -1.1
165,750 + GFF137 0.24 -0.6
165,750 + GFF137 0.24 -0.2
165,750 + GFF137 0.24 +0.2
165,751 - GFF137 0.24 -1.1
165,751 - GFF137 0.24 -1.1
165,828 + GFF137 0.32 +1.0
165,829 - GFF137 0.32 -0.8
165,880 - GFF137 0.37 +0.1
165,880 - GFF137 0.37 -2.0
165,981 + GFF137 0.48 -0.6
165,981 + GFF137 0.48 -0.5
165,982 - GFF137 0.48 +0.1
165,982 - GFF137 0.48 -0.4
165,997 - GFF137 0.49 +1.0
165,997 - GFF137 0.49 +0.6
166,004 + GFF137 0.50 +0.2
166,296 + GFF137 0.80 -0.8
166,296 + GFF137 0.80 +0.7
166,297 - GFF137 0.80 -1.1
166,297 - GFF137 0.80 -0.1
166,299 + GFF137 0.80 -0.8
166,299 + GFF137 0.80 +2.4
166,300 - GFF137 0.80 -1.4
166,300 - GFF137 0.80 -1.7
166,582 + +0.2
166,582 + -0.1
166,582 + +1.2
166,582 + -0.7
166,583 - -0.9
166,583 - +0.5
166,583 - -1.6
166,583 - +0.5
166,673 + GFF138 0.11 -0.3
166,673 + GFF138 0.11 -0.2
166,674 - GFF138 0.11 +0.1
167,083 + -0.8
167,083 + +1.2
167,083 + +1.2
167,083 + -1.8
167,083 + +0.2
167,084 - -0.2
167,084 - -0.2
167,084 - -0.4
167,084 - +0.0
167,084 - -1.0
167,084 - +1.7
167,084 - +3.2
167,089 + -0.7
167,089 + -0.6
167,089 + +2.8
167,089 + +0.5
167,089 + -0.3
167,090 - -0.4
167,149 + -1.4
167,150 - -0.1
167,150 - -0.3
167,179 + GFF139 0.11 +2.2
167,179 + GFF139 0.11 -0.6
167,179 + GFF139 0.11 +0.1
167,179 + GFF139 0.11 -0.1
167,180 - GFF139 0.11 -0.6
167,197 + GFF139 0.12 -0.5
167,197 + GFF139 0.12 +1.0
167,264 - GFF139 0.17 -1.6
167,398 + GFF139 0.28 -0.4
167,398 + GFF139 0.28 +0.8
167,398 + GFF139 0.28 -1.0
167,398 + GFF139 0.28 +0.8
167,399 - GFF139 0.28 +0.5
167,425 + GFF139 0.30 +0.4

Or see this region's nucleotide sequence