Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1344 and GFF1345 are separated by 139 nucleotides GFF1345 and GFF1346 overlap by 1 nucleotides GFF1346 and GFF1347 are separated by 15 nucleotides GFF1347 and GFF1348 are separated by 28 nucleotides
GFF1344 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9), at 687,509 to 688,684
GFF1344
GFF1345 - 3-methylmercaptopropionyl-CoA dehydrogenase (DmdC), at 688,824 to 690,677
GFF1345
GFF1346 - hypothetical protein, at 690,677 to 690,928
GFF1346
GFF1347 - Dabb, at 690,944 to 691,246
GFF1347
GFF1348 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 691,275 to 692,072
GFF1348
Position (kb) 688
689
690
691 Strain fitness (log2 ratio) -2
-1
0
1
2 at 687.842 kb on + strand, within GFF1344 at 687.842 kb on + strand, within GFF1344 at 687.842 kb on + strand, within GFF1344 at 687.842 kb on + strand, within GFF1344 at 687.842 kb on + strand, within GFF1344 at 687.843 kb on - strand, within GFF1344 at 687.843 kb on - strand, within GFF1344 at 687.843 kb on - strand, within GFF1344 at 687.843 kb on - strand, within GFF1344 at 687.843 kb on - strand, within GFF1344 at 687.843 kb on - strand, within GFF1344 at 687.843 kb on - strand, within GFF1344 at 687.843 kb on - strand, within GFF1344 at 687.941 kb on + strand, within GFF1344 at 687.941 kb on + strand, within GFF1344 at 687.942 kb on - strand, within GFF1344 at 687.942 kb on - strand, within GFF1344 at 687.942 kb on - strand, within GFF1344 at 687.942 kb on - strand, within GFF1344 at 687.942 kb on - strand, within GFF1344 at 687.984 kb on - strand, within GFF1344 at 687.984 kb on - strand, within GFF1344 at 688.013 kb on + strand, within GFF1344 at 688.292 kb on + strand, within GFF1344 at 688.292 kb on + strand, within GFF1344 at 688.293 kb on - strand, within GFF1344 at 688.293 kb on - strand, within GFF1344 at 688.476 kb on + strand, within GFF1344 at 688.478 kb on + strand, within GFF1344 at 688.478 kb on + strand, within GFF1344 at 688.478 kb on + strand, within GFF1344 at 688.478 kb on + strand, within GFF1344 at 688.479 kb on - strand, within GFF1344 at 688.479 kb on - strand, within GFF1344 at 688.479 kb on - strand, within GFF1344 at 688.479 kb on - strand, within GFF1344 at 688.479 kb on - strand, within GFF1344 at 688.857 kb on + strand at 688.858 kb on - strand at 688.858 kb on - strand at 688.968 kb on + strand at 688.969 kb on - strand at 689.100 kb on + strand, within GFF1345 at 689.100 kb on + strand, within GFF1345 at 689.101 kb on - strand, within GFF1345 at 689.668 kb on - strand, within GFF1345 at 689.700 kb on + strand, within GFF1345 at 689.823 kb on + strand, within GFF1345 at 689.965 kb on - strand, within GFF1345 at 689.965 kb on - strand, within GFF1345 at 689.994 kb on + strand, within GFF1345 at 689.994 kb on + strand, within GFF1345 at 689.995 kb on - strand, within GFF1345 at 689.995 kb on - strand, within GFF1345 at 689.995 kb on - strand, within GFF1345 at 689.995 kb on - strand, within GFF1345 at 690.156 kb on + strand, within GFF1345 at 690.183 kb on + strand, within GFF1345 at 690.184 kb on - strand, within GFF1345 at 690.184 kb on - strand, within GFF1345 at 690.184 kb on - strand, within GFF1345 at 690.456 kb on + strand, within GFF1345 at 690.456 kb on + strand, within GFF1345 at 690.456 kb on + strand, within GFF1345 at 690.457 kb on - strand, within GFF1345 at 690.457 kb on - strand, within GFF1345 at 690.457 kb on - strand, within GFF1345 at 690.457 kb on - strand, within GFF1345 at 690.457 kb on - strand, within GFF1345 at 690.579 kb on + strand at 690.580 kb on - strand at 690.591 kb on + strand at 690.591 kb on + strand at 690.782 kb on + strand, within GFF1346 at 690.782 kb on + strand, within GFF1346 at 690.782 kb on + strand, within GFF1346 at 690.783 kb on - strand, within GFF1346 at 690.783 kb on - strand, within GFF1346 at 690.899 kb on + strand, within GFF1346 at 690.899 kb on + strand, within GFF1346 at 690.899 kb on + strand, within GFF1346 at 690.899 kb on + strand, within GFF1346 at 690.900 kb on - strand, within GFF1346 at 690.900 kb on - strand, within GFF1346 at 690.900 kb on - strand, within GFF1346 at 690.900 kb on - strand, within GFF1346 at 690.900 kb on - strand, within GFF1346 at 690.900 kb on - strand, within GFF1346 at 690.900 kb on - strand, within GFF1346 at 690.900 kb on - strand, within GFF1346 at 690.926 kb on + strand at 691.109 kb on + strand, within GFF1347 at 691.109 kb on + strand, within GFF1347 at 691.110 kb on - strand, within GFF1347 at 691.110 kb on - strand, within GFF1347 at 691.110 kb on - strand, within GFF1347 at 691.161 kb on - strand, within GFF1347 at 691.235 kb on + strand at 691.235 kb on + strand at 691.235 kb on + strand at 691.236 kb on - strand at 691.650 kb on + strand, within GFF1348
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 687,842 + GFF1344 0.28 -0.6 687,842 + GFF1344 0.28 -0.0 687,842 + GFF1344 0.28 +1.2 687,842 + GFF1344 0.28 -0.5 687,842 + GFF1344 0.28 -0.5 687,843 - GFF1344 0.28 -0.7 687,843 - GFF1344 0.28 -0.0 687,843 - GFF1344 0.28 -0.1 687,843 - GFF1344 0.28 -1.1 687,843 - GFF1344 0.28 +1.4 687,843 - GFF1344 0.28 -1.7 687,843 - GFF1344 0.28 -0.3 687,843 - GFF1344 0.28 +0.7 687,941 + GFF1344 0.37 -1.0 687,941 + GFF1344 0.37 -0.0 687,942 - GFF1344 0.37 -0.1 687,942 - GFF1344 0.37 -0.9 687,942 - GFF1344 0.37 +0.3 687,942 - GFF1344 0.37 -0.6 687,942 - GFF1344 0.37 +0.5 687,984 - GFF1344 0.40 +0.4 687,984 - GFF1344 0.40 -0.9 688,013 + GFF1344 0.43 -0.6 688,292 + GFF1344 0.67 +0.1 688,292 + GFF1344 0.67 -0.5 688,293 - GFF1344 0.67 +0.2 688,293 - GFF1344 0.67 +0.3 688,476 + GFF1344 0.82 +0.3 688,478 + GFF1344 0.82 -0.6 688,478 + GFF1344 0.82 +0.1 688,478 + GFF1344 0.82 -1.2 688,478 + GFF1344 0.82 +1.7 688,479 - GFF1344 0.82 -1.0 688,479 - GFF1344 0.82 -1.9 688,479 - GFF1344 0.82 -0.7 688,479 - GFF1344 0.82 +0.6 688,479 - GFF1344 0.82 +0.9 688,857 + -0.1 688,858 - -1.9 688,858 - -0.7 688,968 + -0.1 688,969 - +0.3 689,100 + GFF1345 0.15 -2.1 689,100 + GFF1345 0.15 +1.2 689,101 - GFF1345 0.15 +1.3 689,668 - GFF1345 0.46 -0.1 689,700 + GFF1345 0.47 +1.0 689,823 + GFF1345 0.54 -0.4 689,965 - GFF1345 0.62 -0.2 689,965 - GFF1345 0.62 +0.3 689,994 + GFF1345 0.63 -1.2 689,994 + GFF1345 0.63 -0.6 689,995 - GFF1345 0.63 -0.3 689,995 - GFF1345 0.63 +0.0 689,995 - GFF1345 0.63 +0.3 689,995 - GFF1345 0.63 +0.5 690,156 + GFF1345 0.72 +0.3 690,183 + GFF1345 0.73 -1.1 690,184 - GFF1345 0.73 -1.5 690,184 - GFF1345 0.73 -0.1 690,184 - GFF1345 0.73 +0.7 690,456 + GFF1345 0.88 -0.4 690,456 + GFF1345 0.88 -2.4 690,456 + GFF1345 0.88 -0.9 690,457 - GFF1345 0.88 +0.1 690,457 - GFF1345 0.88 +0.5 690,457 - GFF1345 0.88 +0.1 690,457 - GFF1345 0.88 -1.0 690,457 - GFF1345 0.88 -2.0 690,579 + -0.1 690,580 - -0.5 690,591 + +0.3 690,591 + -0.0 690,782 + GFF1346 0.42 +0.5 690,782 + GFF1346 0.42 -0.3 690,782 + GFF1346 0.42 -0.9 690,783 - GFF1346 0.42 -0.7 690,783 - GFF1346 0.42 +2.7 690,899 + GFF1346 0.88 -0.3 690,899 + GFF1346 0.88 -0.7 690,899 + GFF1346 0.88 -0.0 690,899 + GFF1346 0.88 -0.1 690,900 - GFF1346 0.88 +0.6 690,900 - GFF1346 0.88 -0.4 690,900 - GFF1346 0.88 -0.3 690,900 - GFF1346 0.88 -1.0 690,900 - GFF1346 0.88 +1.1 690,900 - GFF1346 0.88 +0.6 690,900 - GFF1346 0.88 -1.0 690,900 - GFF1346 0.88 +0.5 690,926 + +0.3 691,109 + GFF1347 0.54 +0.3 691,109 + GFF1347 0.54 -0.6 691,110 - GFF1347 0.55 -0.8 691,110 - GFF1347 0.55 -2.7 691,110 - GFF1347 0.55 -0.1 691,161 - GFF1347 0.72 -0.3 691,235 + -0.4 691,235 + -0.3 691,235 + +0.2 691,236 - +0.8 691,650 + GFF1348 0.47 +0.6
Or see this region's nucleotide sequence