Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1263 and GFF1264 overlap by 4 nucleotides GFF1264 and GFF1265 are separated by 64 nucleotides GFF1265 and GFF1266 are separated by 66 nucleotides
GFF1263 - Serine acetyltransferase (EC 2.3.1.30), at 579,201 to 580,118
GFF1263
GFF1264 - Transcriptional regulator, Xre family, at 580,115 to 580,384
GFF1264
GFF1265 - cAMP-binding protein, at 580,449 to 581,381
GFF1265
GFF1266 - Cysteine desulfurase (EC 2.8.1.7), at 581,448 to 583,253
GFF1266
Position (kb) 580
581
582 Strain fitness (log2 ratio) -1
0
1
2 at 579.601 kb on - strand, within GFF1263 at 579.696 kb on + strand, within GFF1263 at 579.696 kb on + strand, within GFF1263 at 579.697 kb on - strand, within GFF1263 at 579.864 kb on + strand, within GFF1263 at 579.969 kb on + strand, within GFF1263 at 579.969 kb on + strand, within GFF1263 at 580.221 kb on - strand, within GFF1264 at 580.221 kb on - strand, within GFF1264 at 580.251 kb on + strand, within GFF1264 at 580.252 kb on - strand, within GFF1264 at 580.599 kb on + strand, within GFF1265 at 580.600 kb on - strand, within GFF1265 at 580.770 kb on + strand, within GFF1265 at 581.271 kb on + strand, within GFF1265 at 581.272 kb on - strand, within GFF1265 at 581.287 kb on - strand, within GFF1265 at 581.352 kb on + strand at 581.353 kb on - strand at 581.353 kb on - strand at 581.373 kb on + strand at 581.373 kb on + strand at 581.374 kb on - strand at 581.374 kb on - strand at 581.379 kb on + strand at 581.380 kb on - strand at 581.380 kb on - strand at 581.612 kb on + strand at 581.613 kb on - strand at 581.925 kb on + strand, within GFF1266 at 581.925 kb on + strand, within GFF1266
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 579,601 - GFF1263 0.44 -0.7 579,696 + GFF1263 0.54 +0.6 579,696 + GFF1263 0.54 -0.6 579,697 - GFF1263 0.54 -0.2 579,864 + GFF1263 0.72 -0.6 579,969 + GFF1263 0.84 -0.2 579,969 + GFF1263 0.84 -0.4 580,221 - GFF1264 0.39 +0.0 580,221 - GFF1264 0.39 -0.2 580,251 + GFF1264 0.50 +0.0 580,252 - GFF1264 0.51 +0.3 580,599 + GFF1265 0.16 -0.6 580,600 - GFF1265 0.16 +1.6 580,770 + GFF1265 0.34 -0.0 581,271 + GFF1265 0.88 -0.8 581,272 - GFF1265 0.88 +1.6 581,287 - GFF1265 0.90 +1.7 581,352 + -0.0 581,353 - -0.2 581,353 - +0.7 581,373 + +0.8 581,373 + +1.1 581,374 - +0.0 581,374 - -0.2 581,379 + +2.3 581,380 - -0.9 581,380 - -0.2 581,612 + -0.3 581,613 - -0.7 581,925 + GFF1266 0.26 +0.9 581,925 + GFF1266 0.26 +1.1
Or see this region's nucleotide sequence