Strain Fitness in Variovorax sp. SCN45 around GFF1256

Experiment: Community=Locust bean gum; Passage=1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1255 and GFF1256 are separated by 17 nucleotidesGFF1256 and GFF1257 are separated by 75 nucleotidesGFF1257 and GFF1259 are separated by 85 nucleotidesGFF1259 and GFF1258 overlap by 2 nucleotides GFF1255 - O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) @ O-succinylhomoserine sulfhydrylase (EC 2.5.1.48), at 573,466 to 574,752 GFF1255 GFF1256 - Probable NADH dehydrogenase/NAD(P)H nitroreductase, at 574,770 to 575,366 GFF1256 GFF1257 - Organosulfonate utilization protein SsuF, at 575,442 to 575,657 GFF1257 GFF1259 - no description, at 575,743 to 575,880 GFF1259 GFF1258 - FIG00348129: hypothetical protein, at 575,879 to 576,604 GFF1258 Position (kb) 574 575 576Strain fitness (log2 ratio) -2 -1 0 1 2at 573.808 kb on + strand, within GFF1255at 573.808 kb on + strand, within GFF1255at 573.808 kb on + strand, within GFF1255at 573.809 kb on - strand, within GFF1255at 573.809 kb on - strand, within GFF1255at 573.809 kb on - strand, within GFF1255at 574.090 kb on + strand, within GFF1255at 574.091 kb on - strand, within GFF1255at 574.202 kb on - strand, within GFF1255at 574.216 kb on + strand, within GFF1255at 574.243 kb on + strand, within GFF1255at 574.243 kb on + strand, within GFF1255at 574.244 kb on - strand, within GFF1255at 574.469 kb on - strand, within GFF1255at 574.689 kb on - strandat 574.763 kb on + strandat 574.763 kb on + strandat 575.056 kb on - strand, within GFF1256at 575.464 kb on + strand, within GFF1257at 575.465 kb on - strand, within GFF1257at 575.745 kb on - strandat 575.838 kb on + strand, within GFF1259at 575.838 kb on + strand, within GFF1259at 575.839 kb on - strand, within GFF1259at 576.095 kb on + strand, within GFF1258at 576.095 kb on + strand, within GFF1258at 576.096 kb on - strand, within GFF1258at 576.096 kb on - strand, within GFF1258at 576.152 kb on + strand, within GFF1258at 576.152 kb on + strand, within GFF1258at 576.153 kb on - strand, within GFF1258at 576.153 kb on - strand, within GFF1258at 576.153 kb on - strand, within GFF1258at 576.171 kb on - strand, within GFF1258at 576.171 kb on - strand, within GFF1258

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1
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573,808 + GFF1255 0.27 +0.2
573,808 + GFF1255 0.27 -0.3
573,808 + GFF1255 0.27 +0.0
573,809 - GFF1255 0.27 -0.3
573,809 - GFF1255 0.27 +0.3
573,809 - GFF1255 0.27 -0.4
574,090 + GFF1255 0.48 -1.4
574,091 - GFF1255 0.49 -0.3
574,202 - GFF1255 0.57 +1.2
574,216 + GFF1255 0.58 -0.7
574,243 + GFF1255 0.60 -1.3
574,243 + GFF1255 0.60 -0.6
574,244 - GFF1255 0.60 -1.2
574,469 - GFF1255 0.78 +1.9
574,689 - -0.1
574,763 + -0.1
574,763 + +0.6
575,056 - GFF1256 0.48 -1.8
575,464 + GFF1257 0.10 -0.9
575,465 - GFF1257 0.11 -0.2
575,745 - -0.8
575,838 + GFF1259 0.69 +0.6
575,838 + GFF1259 0.69 -0.9
575,839 - GFF1259 0.70 -0.4
576,095 + GFF1258 0.30 +0.1
576,095 + GFF1258 0.30 +0.1
576,096 - GFF1258 0.30 -0.8
576,096 - GFF1258 0.30 -0.2
576,152 + GFF1258 0.38 +0.5
576,152 + GFF1258 0.38 +0.4
576,153 - GFF1258 0.38 -1.7
576,153 - GFF1258 0.38 +0.7
576,153 - GFF1258 0.38 -0.4
576,171 - GFF1258 0.40 +1.0
576,171 - GFF1258 0.40 +0.3

Or see this region's nucleotide sequence