Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1255 and GFF1256 are separated by 17 nucleotides GFF1256 and GFF1257 are separated by 75 nucleotides GFF1257 and GFF1259 are separated by 85 nucleotides GFF1259 and GFF1258 overlap by 2 nucleotides
GFF1255 - O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) @ O-succinylhomoserine sulfhydrylase (EC 2.5.1.48), at 573,466 to 574,752
GFF1255
GFF1256 - Probable NADH dehydrogenase/NAD(P)H nitroreductase, at 574,770 to 575,366
GFF1256
GFF1257 - Organosulfonate utilization protein SsuF, at 575,442 to 575,657
GFF1257
GFF1259 - no description, at 575,743 to 575,880
GFF1259
GFF1258 - FIG00348129: hypothetical protein, at 575,879 to 576,604
GFF1258
Position (kb) 574
575
576 Strain fitness (log2 ratio) -2
-1
0
1
2 at 573.808 kb on + strand, within GFF1255 at 573.808 kb on + strand, within GFF1255 at 573.808 kb on + strand, within GFF1255 at 573.809 kb on - strand, within GFF1255 at 573.809 kb on - strand, within GFF1255 at 573.809 kb on - strand, within GFF1255 at 574.090 kb on + strand, within GFF1255 at 574.091 kb on - strand, within GFF1255 at 574.202 kb on - strand, within GFF1255 at 574.216 kb on + strand, within GFF1255 at 574.243 kb on + strand, within GFF1255 at 574.243 kb on + strand, within GFF1255 at 574.244 kb on - strand, within GFF1255 at 574.469 kb on - strand, within GFF1255 at 574.689 kb on - strand at 574.763 kb on + strand at 574.763 kb on + strand at 575.056 kb on - strand, within GFF1256 at 575.464 kb on + strand, within GFF1257 at 575.465 kb on - strand, within GFF1257 at 575.745 kb on - strand at 575.838 kb on + strand, within GFF1259 at 575.838 kb on + strand, within GFF1259 at 575.839 kb on - strand, within GFF1259 at 576.095 kb on + strand, within GFF1258 at 576.095 kb on + strand, within GFF1258 at 576.096 kb on - strand, within GFF1258 at 576.096 kb on - strand, within GFF1258 at 576.152 kb on + strand, within GFF1258 at 576.152 kb on + strand, within GFF1258 at 576.153 kb on - strand, within GFF1258 at 576.153 kb on - strand, within GFF1258 at 576.153 kb on - strand, within GFF1258 at 576.171 kb on - strand, within GFF1258 at 576.171 kb on - strand, within GFF1258
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 573,808 + GFF1255 0.27 +0.2 573,808 + GFF1255 0.27 -0.3 573,808 + GFF1255 0.27 +0.0 573,809 - GFF1255 0.27 -0.3 573,809 - GFF1255 0.27 +0.3 573,809 - GFF1255 0.27 -0.4 574,090 + GFF1255 0.48 -1.4 574,091 - GFF1255 0.49 -0.3 574,202 - GFF1255 0.57 +1.2 574,216 + GFF1255 0.58 -0.7 574,243 + GFF1255 0.60 -1.3 574,243 + GFF1255 0.60 -0.6 574,244 - GFF1255 0.60 -1.2 574,469 - GFF1255 0.78 +1.9 574,689 - -0.1 574,763 + -0.1 574,763 + +0.6 575,056 - GFF1256 0.48 -1.8 575,464 + GFF1257 0.10 -0.9 575,465 - GFF1257 0.11 -0.2 575,745 - -0.8 575,838 + GFF1259 0.69 +0.6 575,838 + GFF1259 0.69 -0.9 575,839 - GFF1259 0.70 -0.4 576,095 + GFF1258 0.30 +0.1 576,095 + GFF1258 0.30 +0.1 576,096 - GFF1258 0.30 -0.8 576,096 - GFF1258 0.30 -0.2 576,152 + GFF1258 0.38 +0.5 576,152 + GFF1258 0.38 +0.4 576,153 - GFF1258 0.38 -1.7 576,153 - GFF1258 0.38 +0.7 576,153 - GFF1258 0.38 -0.4 576,171 - GFF1258 0.40 +1.0 576,171 - GFF1258 0.40 +0.3
Or see this region's nucleotide sequence