Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1229 and GFF1230 are separated by 34 nucleotides GFF1230 and GFF1231 are separated by 43 nucleotides GFF1231 and GFF1232 are separated by 34 nucleotides
GFF1229 - 4-hydroxybutyrate coenzyme A transferase, at 549,117 to 550,415
GFF1229
GFF1230 - Malic enzyme, at 550,450 to 551,670
GFF1230
GFF1231 - FOG: WD40-like repeat, at 551,714 to 552,379
GFF1231
GFF1232 - Uncharacterized protein conserved in bacteria, at 552,414 to 553,199
GFF1232
Position (kb) 550
551
552 Strain fitness (log2 ratio) -2
-1
0
1
2 at 549.510 kb on + strand, within GFF1229 at 549.511 kb on - strand, within GFF1229 at 549.537 kb on + strand, within GFF1229 at 549.537 kb on + strand, within GFF1229 at 549.538 kb on - strand, within GFF1229 at 549.538 kb on - strand, within GFF1229 at 549.538 kb on - strand, within GFF1229 at 549.607 kb on - strand, within GFF1229 at 549.897 kb on + strand, within GFF1229 at 549.898 kb on - strand, within GFF1229 at 549.898 kb on - strand, within GFF1229 at 549.898 kb on - strand, within GFF1229 at 549.898 kb on - strand, within GFF1229 at 549.898 kb on - strand, within GFF1229 at 549.948 kb on + strand, within GFF1229 at 550.278 kb on + strand, within GFF1229 at 550.278 kb on + strand, within GFF1229 at 550.278 kb on + strand, within GFF1229 at 550.278 kb on + strand, within GFF1229 at 550.278 kb on + strand, within GFF1229 at 550.278 kb on + strand, within GFF1229 at 550.278 kb on + strand, within GFF1229 at 550.279 kb on - strand, within GFF1229 at 550.279 kb on - strand, within GFF1229 at 550.279 kb on - strand, within GFF1229 at 550.279 kb on - strand, within GFF1229 at 550.932 kb on + strand, within GFF1230 at 550.933 kb on - strand, within GFF1230 at 550.933 kb on - strand, within GFF1230 at 550.933 kb on - strand, within GFF1230 at 550.933 kb on - strand, within GFF1230 at 551.642 kb on + strand at 551.642 kb on + strand at 551.642 kb on + strand at 551.643 kb on - strand at 551.643 kb on - strand at 551.661 kb on + strand at 551.662 kb on - strand at 551.668 kb on + strand at 551.668 kb on + strand at 551.669 kb on - strand at 551.669 kb on - strand at 551.669 kb on - strand at 551.768 kb on + strand at 551.939 kb on + strand, within GFF1231 at 551.939 kb on + strand, within GFF1231 at 551.940 kb on - strand, within GFF1231 at 552.315 kb on - strand at 552.429 kb on - strand at 552.588 kb on + strand, within GFF1232 at 552.588 kb on + strand, within GFF1232 at 552.589 kb on - strand, within GFF1232 at 552.589 kb on - strand, within GFF1232 at 552.589 kb on - strand, within GFF1232 at 552.589 kb on - strand, within GFF1232
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 549,510 + GFF1229 0.30 -1.2 549,511 - GFF1229 0.30 -0.9 549,537 + GFF1229 0.32 -0.2 549,537 + GFF1229 0.32 -1.0 549,538 - GFF1229 0.32 +0.7 549,538 - GFF1229 0.32 -0.0 549,538 - GFF1229 0.32 -1.9 549,607 - GFF1229 0.38 -0.3 549,897 + GFF1229 0.60 +0.3 549,898 - GFF1229 0.60 +1.3 549,898 - GFF1229 0.60 -0.5 549,898 - GFF1229 0.60 +0.1 549,898 - GFF1229 0.60 -1.2 549,898 - GFF1229 0.60 -1.6 549,948 + GFF1229 0.64 -0.0 550,278 + GFF1229 0.89 -0.7 550,278 + GFF1229 0.89 -1.3 550,278 + GFF1229 0.89 -0.0 550,278 + GFF1229 0.89 -0.5 550,278 + GFF1229 0.89 -0.2 550,278 + GFF1229 0.89 +0.2 550,278 + GFF1229 0.89 -0.4 550,279 - GFF1229 0.89 +0.2 550,279 - GFF1229 0.89 +0.2 550,279 - GFF1229 0.89 +0.7 550,279 - GFF1229 0.89 -0.6 550,932 + GFF1230 0.39 -0.4 550,933 - GFF1230 0.40 -1.0 550,933 - GFF1230 0.40 -0.7 550,933 - GFF1230 0.40 -1.9 550,933 - GFF1230 0.40 -0.0 551,642 + -0.2 551,642 + +0.3 551,642 + -1.3 551,643 - -0.3 551,643 - -1.0 551,661 + -0.8 551,662 - -0.0 551,668 + +0.3 551,668 + -0.2 551,669 - +0.9 551,669 - +0.6 551,669 - -0.3 551,768 + -0.5 551,939 + GFF1231 0.34 +2.3 551,939 + GFF1231 0.34 +1.3 551,940 - GFF1231 0.34 +0.2 552,315 - -1.4 552,429 - -0.1 552,588 + GFF1232 0.22 -1.4 552,588 + GFF1232 0.22 -0.5 552,589 - GFF1232 0.22 -0.0 552,589 - GFF1232 0.22 -0.4 552,589 - GFF1232 0.22 -0.9 552,589 - GFF1232 0.22 -1.3
Or see this region's nucleotide sequence