Strain Fitness in Variovorax sp. SCN45 around GFF1113

Experiment: Community=Locust bean gum; Passage=1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1112 and GFF1113 are separated by 55 nucleotidesGFF1113 and GFF1114 overlap by 1 nucleotidesGFF1114 and GFF1115 are separated by 75 nucleotides GFF1112 - Hydroxymethylpyrimidine ABC transporter, substrate-binding component, at 428,970 to 430,007 GFF1112 GFF1113 - ABC transporter, ATP-binding protein (cluster 1, maltose/g3p/polyamine/iron); ABC transporter, ATP-binding protein (cluster 10, nitrate/sulfonate/bicarbonate), at 430,063 to 430,878 GFF1113 GFF1114 - ABC transporter, permease protein (cluster 10, nitrate/sulfonate/bicarbonate), at 430,878 to 431,720 GFF1114 GFF1115 - Putative transmembrane protein, at 431,796 to 432,980 GFF1115 Position (kb) 430 431Strain fitness (log2 ratio) -2 -1 0 1 2at 429.105 kb on + strand, within GFF1112at 429.105 kb on + strand, within GFF1112at 429.105 kb on + strand, within GFF1112at 429.105 kb on + strand, within GFF1112at 429.105 kb on + strand, within GFF1112at 429.106 kb on - strand, within GFF1112at 429.106 kb on - strand, within GFF1112at 429.108 kb on + strand, within GFF1112at 429.108 kb on + strand, within GFF1112at 429.108 kb on + strand, within GFF1112at 429.108 kb on + strand, within GFF1112at 429.108 kb on + strand, within GFF1112at 429.109 kb on - strand, within GFF1112at 429.109 kb on - strand, within GFF1112at 429.141 kb on + strand, within GFF1112at 429.141 kb on + strand, within GFF1112at 429.142 kb on - strand, within GFF1112at 429.142 kb on - strand, within GFF1112at 429.145 kb on + strand, within GFF1112at 429.247 kb on - strand, within GFF1112at 429.247 kb on - strand, within GFF1112at 429.247 kb on - strand, within GFF1112at 429.357 kb on + strand, within GFF1112at 429.357 kb on + strand, within GFF1112at 429.358 kb on - strand, within GFF1112at 429.358 kb on - strand, within GFF1112at 429.359 kb on + strand, within GFF1112at 429.359 kb on + strand, within GFF1112at 429.360 kb on - strand, within GFF1112at 429.477 kb on + strand, within GFF1112at 429.477 kb on + strand, within GFF1112at 429.477 kb on + strand, within GFF1112at 429.477 kb on + strand, within GFF1112at 429.477 kb on + strand, within GFF1112at 429.477 kb on + strand, within GFF1112at 429.477 kb on + strand, within GFF1112at 429.478 kb on - strand, within GFF1112at 429.478 kb on - strand, within GFF1112at 429.478 kb on - strand, within GFF1112at 429.478 kb on - strand, within GFF1112at 429.478 kb on - strand, within GFF1112at 429.478 kb on - strand, within GFF1112at 429.478 kb on - strand, within GFF1112at 429.666 kb on + strand, within GFF1112at 429.666 kb on + strand, within GFF1112at 429.667 kb on - strand, within GFF1112at 429.667 kb on - strand, within GFF1112at 429.667 kb on - strand, within GFF1112at 429.795 kb on + strand, within GFF1112at 429.795 kb on + strand, within GFF1112at 429.795 kb on + strand, within GFF1112at 429.795 kb on + strand, within GFF1112at 429.796 kb on - strand, within GFF1112at 429.796 kb on - strand, within GFF1112at 429.796 kb on - strand, within GFF1112at 429.796 kb on - strand, within GFF1112at 429.796 kb on - strand, within GFF1112at 429.796 kb on - strand, within GFF1112at 429.796 kb on - strand, within GFF1112at 429.796 kb on - strand, within GFF1112at 429.819 kb on + strand, within GFF1112at 429.819 kb on + strand, within GFF1112at 429.820 kb on - strand, within GFF1112at 429.960 kb on + strandat 429.960 kb on + strandat 429.960 kb on + strandat 429.960 kb on + strandat 429.960 kb on + strandat 429.961 kb on - strandat 429.961 kb on - strandat 430.135 kb on + strandat 430.135 kb on + strandat 430.135 kb on + strandat 430.315 kb on + strand, within GFF1113at 430.316 kb on - strand, within GFF1113at 430.316 kb on - strand, within GFF1113at 430.316 kb on - strand, within GFF1113at 430.316 kb on - strand, within GFF1113at 430.849 kb on + strandat 430.849 kb on + strandat 430.850 kb on - strandat 430.850 kb on - strandat 431.106 kb on + strand, within GFF1114at 431.106 kb on + strand, within GFF1114at 431.106 kb on + strand, within GFF1114at 431.106 kb on + strand, within GFF1114at 431.106 kb on + strand, within GFF1114at 431.106 kb on + strand, within GFF1114at 431.106 kb on + strand, within GFF1114at 431.106 kb on + strand, within GFF1114at 431.107 kb on - strand, within GFF1114at 431.107 kb on - strand, within GFF1114at 431.107 kb on - strand, within GFF1114at 431.229 kb on + strand, within GFF1114at 431.229 kb on + strand, within GFF1114at 431.229 kb on + strand, within GFF1114at 431.230 kb on - strand, within GFF1114at 431.230 kb on - strand, within GFF1114at 431.230 kb on - strand, within GFF1114at 431.230 kb on - strand, within GFF1114at 431.361 kb on + strand, within GFF1114at 431.361 kb on + strand, within GFF1114at 431.362 kb on - strand, within GFF1114at 431.448 kb on + strand, within GFF1114at 431.448 kb on + strand, within GFF1114at 431.448 kb on + strand, within GFF1114at 431.449 kb on - strand, within GFF1114at 431.449 kb on - strand, within GFF1114at 431.449 kb on - strand, within GFF1114at 431.533 kb on - strand, within GFF1114at 431.533 kb on - strand, within GFF1114at 431.559 kb on + strand, within GFF1114at 431.718 kb on + strandat 431.718 kb on + strandat 431.718 kb on + strandat 431.718 kb on + strandat 431.719 kb on - strandat 431.719 kb on - strandat 431.719 kb on - strandat 431.790 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1
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429,105 + GFF1112 0.13 +0.1
429,105 + GFF1112 0.13 +0.3
429,105 + GFF1112 0.13 -0.5
429,105 + GFF1112 0.13 -0.7
429,105 + GFF1112 0.13 +0.2
429,106 - GFF1112 0.13 -0.8
429,106 - GFF1112 0.13 +0.9
429,108 + GFF1112 0.13 -0.1
429,108 + GFF1112 0.13 -0.6
429,108 + GFF1112 0.13 -0.3
429,108 + GFF1112 0.13 +0.1
429,108 + GFF1112 0.13 -2.0
429,109 - GFF1112 0.13 -0.0
429,109 - GFF1112 0.13 +0.2
429,141 + GFF1112 0.16 -0.1
429,141 + GFF1112 0.16 -0.7
429,142 - GFF1112 0.17 -0.2
429,142 - GFF1112 0.17 +1.3
429,145 + GFF1112 0.17 -0.5
429,247 - GFF1112 0.27 -1.1
429,247 - GFF1112 0.27 +1.3
429,247 - GFF1112 0.27 +0.7
429,357 + GFF1112 0.37 -0.3
429,357 + GFF1112 0.37 -1.0
429,358 - GFF1112 0.37 +1.7
429,358 - GFF1112 0.37 +0.2
429,359 + GFF1112 0.37 -1.2
429,359 + GFF1112 0.37 +0.8
429,360 - GFF1112 0.38 -0.7
429,477 + GFF1112 0.49 +0.6
429,477 + GFF1112 0.49 -0.2
429,477 + GFF1112 0.49 -0.3
429,477 + GFF1112 0.49 +0.1
429,477 + GFF1112 0.49 +1.1
429,477 + GFF1112 0.49 +0.5
429,477 + GFF1112 0.49 +1.3
429,478 - GFF1112 0.49 -0.4
429,478 - GFF1112 0.49 +0.7
429,478 - GFF1112 0.49 +0.9
429,478 - GFF1112 0.49 +1.3
429,478 - GFF1112 0.49 +0.8
429,478 - GFF1112 0.49 +0.4
429,478 - GFF1112 0.49 +0.5
429,666 + GFF1112 0.67 -0.0
429,666 + GFF1112 0.67 -0.4
429,667 - GFF1112 0.67 +0.0
429,667 - GFF1112 0.67 -0.2
429,667 - GFF1112 0.67 +1.3
429,795 + GFF1112 0.79 -0.5
429,795 + GFF1112 0.79 +1.9
429,795 + GFF1112 0.79 +0.8
429,795 + GFF1112 0.79 +0.1
429,796 - GFF1112 0.80 -1.5
429,796 - GFF1112 0.80 -1.7
429,796 - GFF1112 0.80 +0.0
429,796 - GFF1112 0.80 -1.5
429,796 - GFF1112 0.80 -1.2
429,796 - GFF1112 0.80 -0.0
429,796 - GFF1112 0.80 +0.1
429,796 - GFF1112 0.80 -0.0
429,819 + GFF1112 0.82 -0.2
429,819 + GFF1112 0.82 -0.9
429,820 - GFF1112 0.82 -0.3
429,960 + -0.1
429,960 + -0.0
429,960 + -0.5
429,960 + -0.6
429,960 + +0.3
429,961 - -0.2
429,961 - -0.0
430,135 + +2.3
430,135 + -2.0
430,135 + -0.2
430,315 + GFF1113 0.31 +1.2
430,316 - GFF1113 0.31 -0.5
430,316 - GFF1113 0.31 -2.0
430,316 - GFF1113 0.31 -2.6
430,316 - GFF1113 0.31 -1.0
430,849 + +1.1
430,849 + -0.2
430,850 - -0.2
430,850 - -0.6
431,106 + GFF1114 0.27 -0.7
431,106 + GFF1114 0.27 -0.1
431,106 + GFF1114 0.27 +0.1
431,106 + GFF1114 0.27 -0.2
431,106 + GFF1114 0.27 -0.2
431,106 + GFF1114 0.27 -0.5
431,106 + GFF1114 0.27 +0.3
431,106 + GFF1114 0.27 -0.0
431,107 - GFF1114 0.27 -0.2
431,107 - GFF1114 0.27 +0.0
431,107 - GFF1114 0.27 -0.7
431,229 + GFF1114 0.42 -0.0
431,229 + GFF1114 0.42 +0.7
431,229 + GFF1114 0.42 -1.5
431,230 - GFF1114 0.42 -0.1
431,230 - GFF1114 0.42 -0.1
431,230 - GFF1114 0.42 +0.6
431,230 - GFF1114 0.42 -0.5
431,361 + GFF1114 0.57 -2.1
431,361 + GFF1114 0.57 -0.2
431,362 - GFF1114 0.57 -0.2
431,448 + GFF1114 0.68 -0.5
431,448 + GFF1114 0.68 +0.0
431,448 + GFF1114 0.68 -2.0
431,449 - GFF1114 0.68 -0.6
431,449 - GFF1114 0.68 +0.3
431,449 - GFF1114 0.68 -0.1
431,533 - GFF1114 0.78 -0.7
431,533 - GFF1114 0.78 -0.5
431,559 + GFF1114 0.81 -0.5
431,718 + +0.1
431,718 + +0.0
431,718 + +0.8
431,718 + -0.4
431,719 - +0.9
431,719 - -0.1
431,719 - -0.7
431,790 + -0.3

Or see this region's nucleotide sequence