Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1105 and GFF1106 overlap by 4 nucleotides GFF1106 and GFF1107 overlap by 4 nucleotides
GFF1105 - Helicase, at 418,130 to 420,694
GFF1105
GFF1106 - UvrD/REP helicase, at 420,691 to 423,951
GFF1106
GFF1107 - NAD(FAD)-utilizing dehydrogenases, at 423,948 to 425,186
GFF1107
Position (kb) 420
421
422
423
424 Strain fitness (log2 ratio) -2
-1
0
1
2 at 419.936 kb on + strand, within GFF1105 at 419.936 kb on + strand, within GFF1105 at 419.937 kb on - strand, within GFF1105 at 420.371 kb on + strand, within GFF1105 at 420.371 kb on + strand, within GFF1105 at 420.706 kb on + strand at 420.707 kb on - strand at 420.746 kb on - strand at 421.052 kb on - strand, within GFF1106 at 421.171 kb on + strand, within GFF1106 at 421.172 kb on - strand, within GFF1106 at 421.264 kb on + strand, within GFF1106 at 421.267 kb on + strand, within GFF1106 at 421.267 kb on + strand, within GFF1106 at 421.268 kb on - strand, within GFF1106 at 421.390 kb on + strand, within GFF1106 at 421.717 kb on + strand, within GFF1106 at 422.023 kb on + strand, within GFF1106 at 422.023 kb on + strand, within GFF1106 at 423.259 kb on + strand, within GFF1106 at 423.259 kb on + strand, within GFF1106 at 423.260 kb on - strand, within GFF1106 at 423.887 kb on - strand at 423.938 kb on + strand at 424.013 kb on - strand at 424.013 kb on - strand at 424.013 kb on - strand at 424.013 kb on - strand at 424.013 kb on - strand at 424.044 kb on + strand at 424.044 kb on + strand at 424.044 kb on + strand at 424.044 kb on + strand at 424.044 kb on + strand at 424.044 kb on + strand at 424.045 kb on - strand at 424.045 kb on - strand at 424.045 kb on - strand at 424.045 kb on - strand at 424.337 kb on + strand, within GFF1107 at 424.337 kb on + strand, within GFF1107 at 424.337 kb on + strand, within GFF1107 at 424.337 kb on + strand, within GFF1107 at 424.337 kb on + strand, within GFF1107 at 424.338 kb on - strand, within GFF1107 at 424.542 kb on - strand, within GFF1107 at 424.704 kb on + strand, within GFF1107 at 424.704 kb on + strand, within GFF1107 at 424.704 kb on + strand, within GFF1107 at 424.704 kb on + strand, within GFF1107 at 424.704 kb on + strand, within GFF1107 at 424.704 kb on + strand, within GFF1107 at 424.704 kb on + strand, within GFF1107 at 424.705 kb on - strand, within GFF1107 at 424.705 kb on - strand, within GFF1107 at 424.877 kb on + strand, within GFF1107 at 424.877 kb on + strand, within GFF1107 at 424.878 kb on - strand, within GFF1107 at 424.878 kb on - strand, within GFF1107
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 419,936 + GFF1105 0.70 -1.0 419,936 + GFF1105 0.70 -0.2 419,937 - GFF1105 0.70 -1.7 420,371 + GFF1105 0.87 -0.2 420,371 + GFF1105 0.87 -0.2 420,706 + -1.8 420,707 - -0.7 420,746 - +1.3 421,052 - GFF1106 0.11 +1.3 421,171 + GFF1106 0.15 -0.7 421,172 - GFF1106 0.15 +1.3 421,264 + GFF1106 0.18 +1.3 421,267 + GFF1106 0.18 -0.2 421,267 + GFF1106 0.18 -0.2 421,268 - GFF1106 0.18 -1.5 421,390 + GFF1106 0.21 -0.8 421,717 + GFF1106 0.31 +1.3 422,023 + GFF1106 0.41 -0.7 422,023 + GFF1106 0.41 -0.2 423,259 + GFF1106 0.79 -0.2 423,259 + GFF1106 0.79 -0.2 423,260 - GFF1106 0.79 +2.3 423,887 - +1.3 423,938 + -1.4 424,013 - +0.3 424,013 - -0.7 424,013 - -0.2 424,013 - -0.7 424,013 - +2.1 424,044 + -0.9 424,044 + -0.5 424,044 + -0.4 424,044 + +1.6 424,044 + -1.1 424,044 + +0.5 424,045 - -1.5 424,045 - -1.0 424,045 - -1.0 424,045 - +0.1 424,337 + GFF1107 0.31 -1.5 424,337 + GFF1107 0.31 -0.1 424,337 + GFF1107 0.31 -0.5 424,337 + GFF1107 0.31 +0.4 424,337 + GFF1107 0.31 -2.0 424,338 - GFF1107 0.31 -0.4 424,542 - GFF1107 0.48 -1.2 424,704 + GFF1107 0.61 -0.5 424,704 + GFF1107 0.61 -0.0 424,704 + GFF1107 0.61 -0.2 424,704 + GFF1107 0.61 -1.3 424,704 + GFF1107 0.61 -0.2 424,704 + GFF1107 0.61 -0.0 424,704 + GFF1107 0.61 +0.2 424,705 - GFF1107 0.61 -0.5 424,705 - GFF1107 0.61 -0.7 424,877 + GFF1107 0.75 -0.3 424,877 + GFF1107 0.75 +1.3 424,878 - GFF1107 0.75 -1.2 424,878 - GFF1107 0.75 +0.8
Or see this region's nucleotide sequence