Strain Fitness in Variovorax sp. SCN45 around GFF1105

Experiment: Community=Locust bean gum; Passage=1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=1
417,474	+				-0.0
417,552	+				-0.7
417,552	+				-1.0
417,552	+				-0.2
417,553	-				-0.2
417,553	-				-1.0
417,556	+				-1.7
417,556	+				-1.0
417,556	+				-1.5
417,556	+				+0.1
417,556	+				+0.5
417,556	+				-1.2
417,556	+				-0.2
417,582	-				-0.1
417,582	-				-1.1
417,582	-				+0.3
417,582	-				-0.4
418,010	-				-2.3
418,010	-				-0.5
418,124	+				+0.1
418,125	-				+0.8
418,125	-				-0.2
418,125	-				+0.5
418,125	-				-0.1
418,126	+				+0.2
418,253	+				-0.7
418,377	-				-2.2
418,652	+		GFF1105	0.20	+1.3
418,653	-		GFF1105	0.20	+1.3
419,549	+		GFF1105	0.55	-1.7
419,550	-		GFF1105	0.55	+1.3
419,936	+		GFF1105	0.70	-1.0
419,936	+		GFF1105	0.70	-0.2
419,937	-		GFF1105	0.70	-1.7
420,371	+		GFF1105	0.87	-0.2
420,371	+		GFF1105	0.87	-0.2
420,706	+				-1.8
420,707	-				-0.7
420,746	-				+1.3
421,052	-		GFF1106	0.11	+1.3
421,171	+		GFF1106	0.15	-0.7
421,172	-		GFF1106	0.15	+1.3
421,264	+		GFF1106	0.18	+1.3
421,267	+		GFF1106	0.18	-0.2
421,267	+		GFF1106	0.18	-0.2
421,268	-		GFF1106	0.18	-1.5
421,390	+		GFF1106	0.21	-0.8