Strain Fitness in Variovorax sp. SCN45 around GFF1094

Experiment: Community=Locust bean gum; Passage=1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1093 and GFF1094 overlap by 4 nucleotidesGFF1094 and GFF1095 are separated by 17 nucleotidesGFF1095 and GFF1096 are separated by 16 nucleotides GFF1093 - Phosphate ABC transporter, permease protein PstC (TC 3.A.1.7.1), at 405,838 to 406,920 GFF1093 GFF1094 - Phosphate ABC transporter, permease protein PstA (TC 3.A.1.7.1), at 406,917 to 407,804 GFF1094 GFF1095 - Phosphate ABC transporter, ATP-binding protein PstB (TC 3.A.1.7.1), at 407,822 to 408,601 GFF1095 GFF1096 - Phosphate transport system regulatory protein PhoU, at 408,618 to 409,319 GFF1096 Position (kb) 406 407 408Strain fitness (log2 ratio) -2 -1 0 1 2 3at 406.111 kb on + strand, within GFF1093at 406.162 kb on + strand, within GFF1093at 406.163 kb on - strand, within GFF1093at 406.163 kb on - strand, within GFF1093at 406.183 kb on + strand, within GFF1093at 406.183 kb on + strand, within GFF1093at 406.183 kb on + strand, within GFF1093at 406.184 kb on - strand, within GFF1093at 406.184 kb on - strand, within GFF1093at 406.258 kb on - strand, within GFF1093at 406.336 kb on + strand, within GFF1093at 406.336 kb on + strand, within GFF1093at 406.337 kb on - strand, within GFF1093at 406.337 kb on - strand, within GFF1093at 406.465 kb on - strand, within GFF1093at 406.465 kb on - strand, within GFF1093at 406.570 kb on + strand, within GFF1093at 406.822 kb on + strandat 406.822 kb on + strandat 406.823 kb on - strandat 406.849 kb on - strandat 406.849 kb on - strandat 406.849 kb on - strandat 407.080 kb on + strand, within GFF1094at 407.238 kb on + strand, within GFF1094at 407.238 kb on + strand, within GFF1094at 407.238 kb on + strand, within GFF1094at 407.238 kb on + strand, within GFF1094at 407.238 kb on + strand, within GFF1094at 407.238 kb on + strand, within GFF1094at 407.239 kb on - strand, within GFF1094at 407.239 kb on - strand, within GFF1094at 407.239 kb on - strand, within GFF1094at 407.250 kb on + strand, within GFF1094at 407.251 kb on - strand, within GFF1094at 407.251 kb on - strand, within GFF1094at 407.341 kb on - strand, within GFF1094at 407.358 kb on + strand, within GFF1094at 407.481 kb on + strand, within GFF1094at 407.481 kb on + strand, within GFF1094at 407.482 kb on - strand, within GFF1094at 407.482 kb on - strand, within GFF1094at 407.701 kb on - strand, within GFF1094at 407.768 kb on + strandat 407.769 kb on - strandat 407.769 kb on - strandat 407.802 kb on + strandat 407.802 kb on + strandat 407.882 kb on + strandat 407.882 kb on + strandat 407.883 kb on - strandat 407.883 kb on - strandat 407.883 kb on - strandat 407.886 kb on - strandat 408.014 kb on + strand, within GFF1095at 408.434 kb on + strand, within GFF1095at 408.435 kb on - strand, within GFF1095at 408.435 kb on - strand, within GFF1095at 408.457 kb on + strand, within GFF1095at 408.457 kb on + strand, within GFF1095at 408.457 kb on + strand, within GFF1095at 408.458 kb on - strand, within GFF1095at 408.458 kb on - strand, within GFF1095at 408.458 kb on - strand, within GFF1095at 408.489 kb on - strand, within GFF1095at 408.497 kb on + strand, within GFF1095at 408.497 kb on + strand, within GFF1095at 408.497 kb on + strand, within GFF1095at 408.497 kb on + strand, within GFF1095at 408.498 kb on - strand, within GFF1095at 408.498 kb on - strand, within GFF1095at 408.498 kb on - strand, within GFF1095at 408.498 kb on - strand, within GFF1095at 408.498 kb on - strand, within GFF1095at 408.498 kb on - strand, within GFF1095at 408.498 kb on - strand, within GFF1095at 408.498 kb on - strand, within GFF1095at 408.503 kb on + strand, within GFF1095at 408.503 kb on + strand, within GFF1095at 408.504 kb on - strand, within GFF1095at 408.504 kb on - strand, within GFF1095at 408.578 kb on + strandat 408.578 kb on + strandat 408.579 kb on - strandat 408.579 kb on - strandat 408.579 kb on - strandat 408.579 kb on - strandat 408.579 kb on - strandat 408.726 kb on + strand, within GFF1096at 408.727 kb on - strand, within GFF1096at 408.727 kb on - strand, within GFF1096

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1
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406,111 + GFF1093 0.25 +0.6
406,162 + GFF1093 0.30 +0.2
406,163 - GFF1093 0.30 -1.1
406,163 - GFF1093 0.30 -0.4
406,183 + GFF1093 0.32 +0.1
406,183 + GFF1093 0.32 +0.5
406,183 + GFF1093 0.32 -0.3
406,184 - GFF1093 0.32 +0.1
406,184 - GFF1093 0.32 -0.5
406,258 - GFF1093 0.39 +0.7
406,336 + GFF1093 0.46 -0.0
406,336 + GFF1093 0.46 +0.3
406,337 - GFF1093 0.46 -0.6
406,337 - GFF1093 0.46 +0.1
406,465 - GFF1093 0.58 +0.4
406,465 - GFF1093 0.58 +0.7
406,570 + GFF1093 0.68 +0.4
406,822 + +0.6
406,822 + +0.1
406,823 - -0.0
406,849 - +0.5
406,849 - -0.5
406,849 - +1.8
407,080 + GFF1094 0.18 +0.3
407,238 + GFF1094 0.36 -0.6
407,238 + GFF1094 0.36 +0.5
407,238 + GFF1094 0.36 -0.1
407,238 + GFF1094 0.36 +0.2
407,238 + GFF1094 0.36 -0.2
407,238 + GFF1094 0.36 +0.1
407,239 - GFF1094 0.36 +0.8
407,239 - GFF1094 0.36 -0.2
407,239 - GFF1094 0.36 -0.5
407,250 + GFF1094 0.38 +0.9
407,251 - GFF1094 0.38 +1.0
407,251 - GFF1094 0.38 -0.9
407,341 - GFF1094 0.48 +0.5
407,358 + GFF1094 0.50 +1.1
407,481 + GFF1094 0.64 -0.9
407,481 + GFF1094 0.64 +1.8
407,482 - GFF1094 0.64 +0.5
407,482 - GFF1094 0.64 -0.2
407,701 - GFF1094 0.88 -0.3
407,768 + -0.7
407,769 - -0.9
407,769 - -0.7
407,802 + +0.5
407,802 + -0.6
407,882 + -0.9
407,882 + -0.6
407,883 - -0.5
407,883 - -0.7
407,883 - +0.1
407,886 - -1.2
408,014 + GFF1095 0.25 -0.4
408,434 + GFF1095 0.78 -0.6
408,435 - GFF1095 0.79 +0.2
408,435 - GFF1095 0.79 -0.3
408,457 + GFF1095 0.81 +0.5
408,457 + GFF1095 0.81 -2.0
408,457 + GFF1095 0.81 -0.1
408,458 - GFF1095 0.82 -0.0
408,458 - GFF1095 0.82 +0.7
408,458 - GFF1095 0.82 +0.0
408,489 - GFF1095 0.86 +0.2
408,497 + GFF1095 0.87 -0.3
408,497 + GFF1095 0.87 -1.2
408,497 + GFF1095 0.87 +0.0
408,497 + GFF1095 0.87 +0.2
408,498 - GFF1095 0.87 -0.5
408,498 - GFF1095 0.87 +0.5
408,498 - GFF1095 0.87 +3.4
408,498 - GFF1095 0.87 -0.8
408,498 - GFF1095 0.87 -0.6
408,498 - GFF1095 0.87 -0.1
408,498 - GFF1095 0.87 +1.4
408,498 - GFF1095 0.87 -0.1
408,503 + GFF1095 0.87 +0.3
408,503 + GFF1095 0.87 +0.4
408,504 - GFF1095 0.87 +0.5
408,504 - GFF1095 0.87 -0.5
408,578 + -1.3
408,578 + -1.0
408,579 - +0.8
408,579 - -0.5
408,579 - +0.1
408,579 - +0.4
408,579 - +0.5
408,726 + GFF1096 0.15 -0.1
408,727 - GFF1096 0.16 +0.1
408,727 - GFF1096 0.16 -1.0

Or see this region's nucleotide sequence