Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1058 and GFF1059 are separated by 11 nucleotides GFF1059 and GFF1060 overlap by 4 nucleotides GFF1060 and GFF1061 overlap by 22 nucleotides GFF1061 and GFF1062 overlap by 1 nucleotides
GFF1058 - Pyrimidine ABC transporter, substrate-binding component, at 372,324 to 373,331
GFF1058
GFF1059 - Hydroxymethylpyrimidine ABC transporter, ATPase component, at 373,343 to 374,194
GFF1059
GFF1060 - Hydroxymethylpyrimidine ABC transporter, transmembrane component, at 374,191 to 374,949
GFF1060
GFF1061 - Hydroxymethylpyrimidine ABC transporter, transmembrane component, at 374,928 to 375,686
GFF1061
GFF1062 - Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases, at 375,686 to 376,462
GFF1062
Position (kb) 374
375 Strain fitness (log2 ratio) -1
0
1
2 at 373.242 kb on + strand at 373.242 kb on + strand at 373.242 kb on + strand at 373.242 kb on + strand at 373.242 kb on + strand at 373.242 kb on + strand at 373.281 kb on + strand at 374.266 kb on + strand at 374.266 kb on + strand at 374.266 kb on + strand at 374.266 kb on + strand at 374.266 kb on + strand at 374.266 kb on + strand at 374.267 kb on - strand, within GFF1060 at 374.296 kb on + strand, within GFF1060 at 374.443 kb on + strand, within GFF1060 at 374.443 kb on + strand, within GFF1060 at 374.444 kb on - strand, within GFF1060 at 375.141 kb on + strand, within GFF1061 at 375.248 kb on + strand, within GFF1061 at 375.249 kb on - strand, within GFF1061 at 375.259 kb on - strand, within GFF1061 at 375.561 kb on + strand, within GFF1061 at 375.562 kb on - strand, within GFF1061 at 375.562 kb on - strand, within GFF1061 at 375.562 kb on - strand, within GFF1061 at 375.562 kb on - strand, within GFF1061 at 375.562 kb on - strand, within GFF1061 at 375.761 kb on + strand at 375.800 kb on + strand, within GFF1062 at 375.800 kb on + strand, within GFF1062 at 375.801 kb on - strand, within GFF1062 at 375.801 kb on - strand, within GFF1062
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 373,242 + -0.5 373,242 + -0.7 373,242 + -0.1 373,242 + -0.7 373,242 + +0.8 373,242 + +0.7 373,281 + -1.7 374,266 + +0.6 374,266 + -0.4 374,266 + -0.3 374,266 + -0.1 374,266 + +0.0 374,266 + -0.5 374,267 - GFF1060 0.10 +1.0 374,296 + GFF1060 0.14 +1.4 374,443 + GFF1060 0.33 +0.0 374,443 + GFF1060 0.33 -0.6 374,444 - GFF1060 0.33 +1.8 375,141 + GFF1061 0.28 -0.0 375,248 + GFF1061 0.42 -0.6 375,249 - GFF1061 0.42 -0.0 375,259 - GFF1061 0.44 +0.0 375,561 + GFF1061 0.83 -0.2 375,562 - GFF1061 0.84 +1.0 375,562 - GFF1061 0.84 +0.2 375,562 - GFF1061 0.84 -1.5 375,562 - GFF1061 0.84 -0.1 375,562 - GFF1061 0.84 -0.1 375,761 + -0.4 375,800 + GFF1062 0.15 -0.4 375,800 + GFF1062 0.15 -0.1 375,801 - GFF1062 0.15 +0.8 375,801 - GFF1062 0.15 +1.9
Or see this region's nucleotide sequence