Experiment: Community=Locust bean gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1046 and GFF1047 are separated by 350 nucleotides GFF1047 and GFF1048 are separated by 21 nucleotides
GFF1046 - Enoyl-CoA hydratase/isomerase, at 361,855 to 362,679
GFF1046
GFF1047 - hypothetical protein, at 363,030 to 363,344
GFF1047
GFF1048 - Acyl-CoA dehydrogenase; probable dibenzothiophene desulfurization enzyme, at 363,366 to 364,640
GFF1048
Position (kb) 363
364 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 362.621 kb on + strand at 362.621 kb on + strand at 362.621 kb on + strand at 362.621 kb on + strand at 362.621 kb on + strand at 362.621 kb on + strand at 362.621 kb on + strand at 362.621 kb on + strand at 362.622 kb on - strand at 362.622 kb on - strand at 362.622 kb on - strand at 362.686 kb on - strand at 362.744 kb on + strand at 362.744 kb on + strand at 362.744 kb on + strand at 362.744 kb on + strand at 362.744 kb on + strand at 362.744 kb on + strand at 362.744 kb on + strand at 362.744 kb on + strand at 362.744 kb on + strand at 362.744 kb on + strand at 362.744 kb on + strand at 362.745 kb on - strand at 362.745 kb on - strand at 362.745 kb on - strand at 362.745 kb on - strand at 362.745 kb on - strand at 362.745 kb on - strand at 362.745 kb on - strand at 362.745 kb on - strand at 362.745 kb on - strand at 362.745 kb on - strand at 362.745 kb on - strand at 362.745 kb on - strand at 362.745 kb on - strand at 362.745 kb on - strand at 362.745 kb on - strand at 362.745 kb on - strand at 362.745 kb on - strand at 362.745 kb on - strand at 362.745 kb on - strand at 362.745 kb on - strand at 362.745 kb on - strand at 362.774 kb on + strand at 362.774 kb on + strand at 362.775 kb on - strand at 362.775 kb on - strand at 362.829 kb on + strand at 362.830 kb on - strand at 362.830 kb on - strand at 362.830 kb on - strand at 362.840 kb on + strand at 362.840 kb on + strand at 362.841 kb on - strand at 362.871 kb on + strand at 362.872 kb on - strand at 362.878 kb on - strand at 362.878 kb on - strand at 362.878 kb on - strand at 362.883 kb on - strand at 362.923 kb on + strand at 362.924 kb on - strand at 362.960 kb on + strand at 362.961 kb on - strand at 362.961 kb on - strand at 362.992 kb on + strand at 362.992 kb on + strand at 363.054 kb on - strand at 363.054 kb on - strand at 363.090 kb on + strand, within GFF1047 at 363.090 kb on + strand, within GFF1047 at 363.090 kb on + strand, within GFF1047 at 363.090 kb on + strand, within GFF1047 at 363.090 kb on + strand, within GFF1047 at 363.090 kb on + strand, within GFF1047 at 363.090 kb on + strand, within GFF1047 at 363.090 kb on + strand, within GFF1047 at 363.090 kb on + strand, within GFF1047 at 363.090 kb on + strand, within GFF1047 at 363.090 kb on + strand, within GFF1047 at 363.090 kb on + strand, within GFF1047 at 363.090 kb on + strand, within GFF1047 at 363.091 kb on - strand, within GFF1047 at 363.091 kb on - strand, within GFF1047 at 363.091 kb on - strand, within GFF1047 at 363.091 kb on - strand, within GFF1047 at 363.091 kb on - strand, within GFF1047 at 363.091 kb on - strand, within GFF1047 at 363.091 kb on - strand, within GFF1047 at 363.091 kb on - strand, within GFF1047 at 363.091 kb on - strand, within GFF1047 at 363.096 kb on + strand, within GFF1047 at 363.096 kb on + strand, within GFF1047 at 363.096 kb on + strand, within GFF1047 at 363.096 kb on + strand, within GFF1047 at 363.096 kb on + strand, within GFF1047 at 363.096 kb on + strand, within GFF1047 at 363.096 kb on + strand, within GFF1047 at 363.096 kb on + strand, within GFF1047 at 363.096 kb on + strand, within GFF1047 at 363.096 kb on + strand, within GFF1047 at 363.096 kb on + strand, within GFF1047 at 363.096 kb on + strand, within GFF1047 at 363.096 kb on + strand, within GFF1047 at 363.096 kb on + strand, within GFF1047 at 363.096 kb on + strand, within GFF1047 at 363.096 kb on + strand, within GFF1047 at 363.096 kb on + strand, within GFF1047 at 363.096 kb on + strand, within GFF1047 at 363.096 kb on + strand, within GFF1047 at 363.096 kb on + strand, within GFF1047 at 363.097 kb on - strand, within GFF1047 at 363.097 kb on - strand, within GFF1047 at 363.097 kb on - strand, within GFF1047 at 363.097 kb on - strand, within GFF1047 at 363.097 kb on - strand, within GFF1047 at 363.097 kb on - strand, within GFF1047 at 363.097 kb on - strand, within GFF1047 at 363.097 kb on - strand, within GFF1047 at 363.097 kb on - strand, within GFF1047 at 363.097 kb on - strand, within GFF1047 at 363.097 kb on - strand, within GFF1047 at 363.097 kb on - strand, within GFF1047 at 363.097 kb on - strand, within GFF1047 at 363.097 kb on - strand, within GFF1047 at 363.097 kb on - strand, within GFF1047 at 363.097 kb on - strand, within GFF1047 at 363.097 kb on - strand, within GFF1047 at 363.097 kb on - strand, within GFF1047 at 363.097 kb on - strand, within GFF1047 at 363.097 kb on - strand, within GFF1047 at 363.211 kb on + strand, within GFF1047 at 363.211 kb on + strand, within GFF1047 at 363.211 kb on + strand, within GFF1047 at 363.211 kb on + strand, within GFF1047 at 363.211 kb on + strand, within GFF1047 at 363.211 kb on + strand, within GFF1047 at 363.211 kb on + strand, within GFF1047 at 363.211 kb on + strand, within GFF1047 at 363.211 kb on + strand, within GFF1047 at 363.211 kb on + strand, within GFF1047 at 363.212 kb on - strand, within GFF1047 at 363.212 kb on - strand, within GFF1047 at 363.212 kb on - strand, within GFF1047 at 363.212 kb on - strand, within GFF1047 at 363.212 kb on - strand, within GFF1047 at 363.212 kb on - strand, within GFF1047 at 363.212 kb on - strand, within GFF1047 at 363.212 kb on - strand, within GFF1047 at 363.212 kb on - strand, within GFF1047 at 363.212 kb on - strand, within GFF1047 at 363.212 kb on - strand, within GFF1047 at 363.212 kb on - strand, within GFF1047 at 363.212 kb on - strand, within GFF1047 at 363.212 kb on - strand, within GFF1047 at 363.394 kb on + strand at 363.394 kb on + strand at 363.394 kb on + strand at 363.394 kb on + strand at 363.394 kb on + strand at 363.394 kb on + strand at 363.394 kb on + strand at 363.394 kb on + strand at 363.394 kb on + strand at 363.394 kb on + strand at 363.395 kb on - strand at 363.395 kb on - strand at 363.395 kb on - strand at 363.395 kb on - strand at 363.395 kb on - strand at 363.395 kb on - strand at 363.395 kb on - strand at 363.395 kb on - strand at 363.395 kb on - strand at 363.395 kb on - strand at 363.395 kb on - strand at 363.448 kb on + strand at 363.448 kb on + strand at 363.448 kb on + strand at 363.448 kb on + strand at 363.448 kb on + strand at 363.448 kb on + strand at 363.448 kb on + strand at 363.448 kb on + strand at 363.449 kb on - strand at 363.449 kb on - strand at 363.449 kb on - strand at 363.449 kb on - strand at 363.449 kb on - strand at 363.449 kb on - strand at 363.449 kb on - strand at 363.449 kb on - strand at 363.449 kb on - strand at 363.449 kb on - strand at 363.449 kb on - strand at 363.793 kb on + strand, within GFF1048 at 363.793 kb on + strand, within GFF1048 at 363.793 kb on + strand, within GFF1048 at 363.793 kb on + strand, within GFF1048 at 363.793 kb on + strand, within GFF1048 at 363.793 kb on + strand, within GFF1048 at 363.794 kb on - strand, within GFF1048 at 363.794 kb on - strand, within GFF1048 at 363.794 kb on - strand, within GFF1048 at 363.919 kb on + strand, within GFF1048 at 363.919 kb on + strand, within GFF1048 at 363.919 kb on + strand, within GFF1048 at 363.919 kb on + strand, within GFF1048 at 363.919 kb on + strand, within GFF1048 at 363.919 kb on + strand, within GFF1048 at 363.919 kb on + strand, within GFF1048 at 363.919 kb on + strand, within GFF1048 at 363.919 kb on + strand, within GFF1048 at 363.920 kb on - strand, within GFF1048 at 363.920 kb on - strand, within GFF1048 at 363.920 kb on - strand, within GFF1048 at 363.920 kb on - strand, within GFF1048 at 363.920 kb on - strand, within GFF1048 at 363.920 kb on - strand, within GFF1048 at 364.114 kb on + strand, within GFF1048 at 364.115 kb on - strand, within GFF1048 at 364.115 kb on - strand, within GFF1048 at 364.115 kb on - strand, within GFF1048 at 364.132 kb on + strand, within GFF1048 at 364.132 kb on + strand, within GFF1048 at 364.132 kb on + strand, within GFF1048 at 364.132 kb on + strand, within GFF1048 at 364.132 kb on + strand, within GFF1048 at 364.132 kb on + strand, within GFF1048 at 364.132 kb on + strand, within GFF1048 at 364.132 kb on + strand, within GFF1048 at 364.133 kb on - strand, within GFF1048 at 364.133 kb on - strand, within GFF1048 at 364.133 kb on - strand, within GFF1048 at 364.133 kb on - strand, within GFF1048 at 364.133 kb on - strand, within GFF1048 at 364.133 kb on - strand, within GFF1048 at 364.133 kb on - strand, within GFF1048 at 364.135 kb on + strand, within GFF1048 at 364.135 kb on + strand, within GFF1048 at 364.135 kb on + strand, within GFF1048 at 364.135 kb on + strand, within GFF1048 at 364.135 kb on + strand, within GFF1048 at 364.135 kb on + strand, within GFF1048 at 364.135 kb on + strand, within GFF1048 at 364.135 kb on + strand, within GFF1048 at 364.135 kb on + strand, within GFF1048 at 364.135 kb on + strand, within GFF1048 at 364.135 kb on + strand, within GFF1048 at 364.135 kb on + strand, within GFF1048 at 364.136 kb on - strand, within GFF1048 at 364.136 kb on - strand, within GFF1048 at 364.136 kb on - strand, within GFF1048 at 364.136 kb on - strand, within GFF1048 at 364.136 kb on - strand, within GFF1048 at 364.136 kb on - strand, within GFF1048 at 364.136 kb on - strand, within GFF1048 at 364.136 kb on - strand, within GFF1048 at 364.136 kb on - strand, within GFF1048 at 364.136 kb on - strand, within GFF1048 at 364.136 kb on - strand, within GFF1048 at 364.136 kb on - strand, within GFF1048 at 364.136 kb on - strand, within GFF1048 at 364.136 kb on - strand, within GFF1048 at 364.136 kb on - strand, within GFF1048 at 364.136 kb on - strand, within GFF1048 at 364.332 kb on + strand, within GFF1048 at 364.332 kb on + strand, within GFF1048 at 364.332 kb on + strand, within GFF1048 at 364.333 kb on - strand, within GFF1048 at 364.333 kb on - strand, within GFF1048 at 364.333 kb on - strand, within GFF1048
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=1 remove 362,621 + +0.4 362,621 + -1.0 362,621 + +1.8 362,621 + +0.1 362,621 + -0.6 362,621 + -1.2 362,621 + +0.0 362,621 + -0.5 362,622 - -1.6 362,622 - -0.2 362,622 - +0.0 362,686 - +0.0 362,744 + +0.1 362,744 + -0.6 362,744 + +0.3 362,744 + +0.1 362,744 + -0.2 362,744 + -0.0 362,744 + +0.0 362,744 + -0.6 362,744 + -0.5 362,744 + -0.0 362,744 + +1.4 362,745 - -1.5 362,745 - -1.8 362,745 - -1.5 362,745 - -0.0 362,745 - +0.4 362,745 - +0.6 362,745 - -0.0 362,745 - -1.1 362,745 - -0.4 362,745 - -0.2 362,745 - -0.1 362,745 - -0.5 362,745 - +0.1 362,745 - +2.5 362,745 - +0.8 362,745 - -0.4 362,745 - +0.4 362,745 - +1.2 362,745 - -0.2 362,745 - -0.2 362,745 - +0.8 362,774 + -1.4 362,774 + -0.5 362,775 - -0.1 362,775 - +0.2 362,829 + -0.4 362,830 - +0.8 362,830 - -1.1 362,830 - +0.2 362,840 + -0.0 362,840 + +0.2 362,841 - +0.1 362,871 + +0.0 362,872 - -1.0 362,878 - -0.8 362,878 - +0.1 362,878 - -2.3 362,883 - -0.0 362,923 + -0.3 362,924 - -0.0 362,960 + -0.2 362,961 - +0.4 362,961 - -0.2 362,992 + +0.4 362,992 + -1.0 363,054 - -0.7 363,054 - -1.5 363,090 + GFF1047 0.19 +0.8 363,090 + GFF1047 0.19 -0.6 363,090 + GFF1047 0.19 -1.7 363,090 + GFF1047 0.19 +0.3 363,090 + GFF1047 0.19 -0.4 363,090 + GFF1047 0.19 -0.9 363,090 + GFF1047 0.19 -0.7 363,090 + GFF1047 0.19 -1.0 363,090 + GFF1047 0.19 -0.8 363,090 + GFF1047 0.19 -0.8 363,090 + GFF1047 0.19 -1.0 363,090 + GFF1047 0.19 -0.8 363,090 + GFF1047 0.19 +0.0 363,091 - GFF1047 0.19 +0.8 363,091 - GFF1047 0.19 +0.0 363,091 - GFF1047 0.19 -2.3 363,091 - GFF1047 0.19 +0.0 363,091 - GFF1047 0.19 -0.2 363,091 - GFF1047 0.19 -1.1 363,091 - GFF1047 0.19 -2.1 363,091 - GFF1047 0.19 +0.7 363,091 - GFF1047 0.19 -0.6 363,096 + GFF1047 0.21 -0.8 363,096 + GFF1047 0.21 -2.4 363,096 + GFF1047 0.21 -2.0 363,096 + GFF1047 0.21 +0.4 363,096 + GFF1047 0.21 -0.7 363,096 + GFF1047 0.21 -2.7 363,096 + GFF1047 0.21 +1.9 363,096 + GFF1047 0.21 +0.1 363,096 + GFF1047 0.21 -1.7 363,096 + GFF1047 0.21 -2.9 363,096 + GFF1047 0.21 +0.4 363,096 + GFF1047 0.21 -0.2 363,096 + GFF1047 0.21 -0.6 363,096 + GFF1047 0.21 -0.4 363,096 + GFF1047 0.21 -0.8 363,096 + GFF1047 0.21 -1.8 363,096 + GFF1047 0.21 -0.4 363,096 + GFF1047 0.21 -1.2 363,096 + GFF1047 0.21 -0.2 363,096 + GFF1047 0.21 -0.9 363,097 - GFF1047 0.21 +0.2 363,097 - GFF1047 0.21 +0.4 363,097 - GFF1047 0.21 -1.3 363,097 - GFF1047 0.21 -0.0 363,097 - GFF1047 0.21 -1.8 363,097 - GFF1047 0.21 -0.2 363,097 - GFF1047 0.21 -1.4 363,097 - GFF1047 0.21 +0.4 363,097 - GFF1047 0.21 -0.2 363,097 - GFF1047 0.21 +0.1 363,097 - GFF1047 0.21 +1.0 363,097 - GFF1047 0.21 -0.3 363,097 - GFF1047 0.21 -0.2 363,097 - GFF1047 0.21 +0.8 363,097 - GFF1047 0.21 +0.7 363,097 - GFF1047 0.21 -0.9 363,097 - GFF1047 0.21 +0.1 363,097 - GFF1047 0.21 -0.2 363,097 - GFF1047 0.21 -0.8 363,097 - GFF1047 0.21 -0.6 363,211 + GFF1047 0.57 -1.8 363,211 + GFF1047 0.57 -0.5 363,211 + GFF1047 0.57 -3.2 363,211 + GFF1047 0.57 -0.5 363,211 + GFF1047 0.57 -0.2 363,211 + GFF1047 0.57 -0.7 363,211 + GFF1047 0.57 -2.0 363,211 + GFF1047 0.57 -1.3 363,211 + GFF1047 0.57 -0.6 363,211 + GFF1047 0.57 -2.8 363,212 - GFF1047 0.58 +0.5 363,212 - GFF1047 0.58 -0.6 363,212 - GFF1047 0.58 -0.7 363,212 - GFF1047 0.58 +0.8 363,212 - GFF1047 0.58 -0.1 363,212 - GFF1047 0.58 -0.2 363,212 - GFF1047 0.58 -0.1 363,212 - GFF1047 0.58 -0.3 363,212 - GFF1047 0.58 -1.4 363,212 - GFF1047 0.58 -1.2 363,212 - GFF1047 0.58 -1.2 363,212 - GFF1047 0.58 -1.5 363,212 - GFF1047 0.58 -0.1 363,212 - GFF1047 0.58 -0.7 363,394 + -0.2 363,394 + -1.6 363,394 + -0.0 363,394 + -1.0 363,394 + +0.0 363,394 + +0.6 363,394 + -0.3 363,394 + -0.9 363,394 + +0.4 363,394 + +2.4 363,395 - +1.0 363,395 - -0.1 363,395 - +0.3 363,395 - -0.6 363,395 - -0.0 363,395 - +1.3 363,395 - -1.2 363,395 - -0.5 363,395 - -1.0 363,395 - +0.1 363,395 - +0.1 363,448 + -1.4 363,448 + -1.5 363,448 + -1.2 363,448 + -0.7 363,448 + -0.4 363,448 + +0.8 363,448 + -0.4 363,448 + -0.9 363,449 - +0.6 363,449 - -0.9 363,449 - -1.0 363,449 - +0.0 363,449 - -0.3 363,449 - -1.1 363,449 - +0.9 363,449 - -1.0 363,449 - +1.0 363,449 - -0.2 363,449 - -0.7 363,793 + GFF1048 0.33 +0.4 363,793 + GFF1048 0.33 +0.5 363,793 + GFF1048 0.33 +0.4 363,793 + GFF1048 0.33 -1.4 363,793 + GFF1048 0.33 +0.2 363,793 + GFF1048 0.33 -0.2 363,794 - GFF1048 0.34 -1.2 363,794 - GFF1048 0.34 -0.8 363,794 - GFF1048 0.34 -1.3 363,919 + GFF1048 0.43 -0.3 363,919 + GFF1048 0.43 -1.6 363,919 + GFF1048 0.43 -2.1 363,919 + GFF1048 0.43 -0.3 363,919 + GFF1048 0.43 -0.2 363,919 + GFF1048 0.43 -1.4 363,919 + GFF1048 0.43 -0.2 363,919 + GFF1048 0.43 -1.4 363,919 + GFF1048 0.43 +0.6 363,920 - GFF1048 0.43 -1.1 363,920 - GFF1048 0.43 -0.0 363,920 - GFF1048 0.43 +0.1 363,920 - GFF1048 0.43 +0.5 363,920 - GFF1048 0.43 +0.4 363,920 - GFF1048 0.43 -0.3 364,114 + GFF1048 0.59 -0.5 364,115 - GFF1048 0.59 -0.6 364,115 - GFF1048 0.59 -1.6 364,115 - GFF1048 0.59 +0.4 364,132 + GFF1048 0.60 +0.1 364,132 + GFF1048 0.60 -0.4 364,132 + GFF1048 0.60 -0.9 364,132 + GFF1048 0.60 +0.3 364,132 + GFF1048 0.60 -0.5 364,132 + GFF1048 0.60 +1.8 364,132 + GFF1048 0.60 -0.3 364,132 + GFF1048 0.60 -1.0 364,133 - GFF1048 0.60 -0.6 364,133 - GFF1048 0.60 -0.4 364,133 - GFF1048 0.60 -0.4 364,133 - GFF1048 0.60 -0.8 364,133 - GFF1048 0.60 +0.1 364,133 - GFF1048 0.60 -0.3 364,133 - GFF1048 0.60 -0.8 364,135 + GFF1048 0.60 -0.4 364,135 + GFF1048 0.60 -1.6 364,135 + GFF1048 0.60 +0.5 364,135 + GFF1048 0.60 +0.0 364,135 + GFF1048 0.60 -0.1 364,135 + GFF1048 0.60 +1.4 364,135 + GFF1048 0.60 -0.6 364,135 + GFF1048 0.60 -0.2 364,135 + GFF1048 0.60 +1.0 364,135 + GFF1048 0.60 -0.1 364,135 + GFF1048 0.60 +0.4 364,135 + GFF1048 0.60 -0.6 364,136 - GFF1048 0.60 +0.3 364,136 - GFF1048 0.60 -0.5 364,136 - GFF1048 0.60 -1.0 364,136 - GFF1048 0.60 +0.2 364,136 - GFF1048 0.60 -0.5 364,136 - GFF1048 0.60 +0.3 364,136 - GFF1048 0.60 +1.4 364,136 - GFF1048 0.60 -0.7 364,136 - GFF1048 0.60 -0.8 364,136 - GFF1048 0.60 -0.3 364,136 - GFF1048 0.60 -1.0 364,136 - GFF1048 0.60 -0.4 364,136 - GFF1048 0.60 -0.5 364,136 - GFF1048 0.60 -1.6 364,136 - GFF1048 0.60 -0.1 364,136 - GFF1048 0.60 -0.2 364,332 + GFF1048 0.76 -0.2 364,332 + GFF1048 0.76 -0.8 364,332 + GFF1048 0.76 +0.0 364,333 - GFF1048 0.76 +0.4 364,333 - GFF1048 0.76 -2.2 364,333 - GFF1048 0.76 -0.3
Or see this region's nucleotide sequence