Strain Fitness in Escherichia coli ECRC98 around JDDGAC_27535

Experiment: GB_JK32

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	GB_JK32
5,293,838	-	cdd	JDDGAC_27525	0.81	-0.2
5,293,838	-	cdd	JDDGAC_27525	0.81	+1.6
5,293,922	+				+0.1
5,293,922	+				+0.3
5,293,923	-				+1.7
5,293,923	-				-1.4
5,293,923	-				+0.6
5,293,938	+				+1.6
5,293,939	-				+2.1
5,293,939	-				-1.6
5,293,939	-				-0.2
5,294,018	-				+0.3
5,294,060	+				-1.0
5,294,060	+				-2.5
5,294,061	-				-1.3
5,294,061	-				-1.5
5,294,061	-				-1.1
5,294,062	+				+0.9
5,294,062	+				-1.2
5,294,063	-				+1.1
5,294,063	-				+0.2
5,294,154	+				+0.2
5,294,155	-				-1.9
5,294,188	-				-1.5
5,294,188	-				+1.2
5,294,201	-				-2.0
5,294,220	+	yohK	JDDGAC_27530	0.12	-2.6
5,294,220	+	yohK	JDDGAC_27530	0.12	-0.8
5,294,221	-	yohK	JDDGAC_27530	0.12	-1.3
5,294,314	-	yohK	JDDGAC_27530	0.26	-3.3
5,294,331	+	yohK	JDDGAC_27530	0.28	-1.5
5,294,340	+	yohK	JDDGAC_27530	0.30	+0.1
5,294,340	+	yohK	JDDGAC_27530	0.30	-1.3
5,294,341	-	yohK	JDDGAC_27530	0.30	-1.0
5,294,341	-	yohK	JDDGAC_27530	0.30	-1.2
5,294,597	+	yohK	JDDGAC_27530	0.67	-3.5
5,294,598	-	yohK	JDDGAC_27530	0.67	+0.4
5,294,598	-	yohK	JDDGAC_27530	0.67	+0.6
5,294,598	-	yohK	JDDGAC_27530	0.67	-1.8
5,294,599	+	yohK	JDDGAC_27530	0.67	-0.1
5,294,599	+	yohK	JDDGAC_27530	0.67	+0.8
5,294,599	+	yohK	JDDGAC_27530	0.67	-0.0
5,294,600	-	yohK	JDDGAC_27530	0.67	-2.5
5,294,607	-	yohK	JDDGAC_27530	0.68	-2.6
5,294,607	-	yohK	JDDGAC_27530	0.68	-5.1
5,294,666	+	yohK	JDDGAC_27530	0.76	+1.6
5,294,667	-	yohK	JDDGAC_27530	0.77	-3.3
5,294,751	+	yohK	JDDGAC_27530	0.89	-1.9
5,294,751	+	yohK	JDDGAC_27530	0.89	-2.8
5,294,751	+	yohK	JDDGAC_27530	0.89	+0.1
5,294,752	-	yohK	JDDGAC_27530	0.89	-2.6
5,294,752	-	yohK	JDDGAC_27530	0.89	-1.8
5,294,818	-				-4.3
5,294,818	-				-1.6
5,294,850	+				-2.5
5,294,858	+				-0.7
5,294,858	+				-2.6
5,294,872	-	yohJ	JDDGAC_27535	0.12	-2.4
5,294,915	+	yohJ	JDDGAC_27535	0.22	-3.9
5,294,972	-	yohJ	JDDGAC_27535	0.37	-1.8
5,295,014	+	yohJ	JDDGAC_27535	0.47	-0.8
5,295,017	-	yohJ	JDDGAC_27535	0.48	-2.6
5,295,031	+	yohJ	JDDGAC_27535	0.51	+0.8
5,295,031	+	yohJ	JDDGAC_27535	0.51	-2.4
5,295,031	+	yohJ	JDDGAC_27535	0.51	-2.8
5,295,031	+	yohJ	JDDGAC_27535	0.51	-0.3
5,295,032	-	yohJ	JDDGAC_27535	0.52	-1.1
5,295,032	-	yohJ	JDDGAC_27535	0.52	-1.3
5,295,032	-	yohJ	JDDGAC_27535	0.52	-2.0
5,295,032	-	yohJ	JDDGAC_27535	0.52	-3.4
5,295,169	+	yohJ	JDDGAC_27535	0.86	-1.7
5,295,170	-	yohJ	JDDGAC_27535	0.86	-0.2
5,295,170	-	yohJ	JDDGAC_27535	0.86	-2.4
5,295,194	-				-3.7
5,295,194	-				-1.9
5,295,194	-				-3.0
5,295,219	-				+1.6
5,295,225	-				+1.2
5,295,225	-				-1.3
5,295,256	+				-4.0
5,295,262	+				-0.7
5,295,279	+				-2.4
5,295,291	+				+2.6
5,295,306	+				-1.2
5,295,326	-				+1.8
5,295,388	+				-1.4
5,295,389	-				+2.2
5,295,389	-				+1.0
5,295,389	-				-1.5
5,295,395	+				-0.7
5,295,448	+	lysR	JDDGAC_27540	0.10	+1.9
5,295,448	+	lysR	JDDGAC_27540	0.10	+0.1
5,295,508	+	lysR	JDDGAC_27540	0.17	+0.5
5,295,519	+	lysR	JDDGAC_27540	0.18	+0.3
5,295,598	+	lysR	JDDGAC_27540	0.27	+1.7
5,295,627	+	lysR	JDDGAC_27540	0.30	+0.2
5,295,627	+	lysR	JDDGAC_27540	0.30	+0.1
5,295,627	+	lysR	JDDGAC_27540	0.30	-0.1
5,295,630	+	lysR	JDDGAC_27540	0.30	+2.0
5,295,631	-	lysR	JDDGAC_27540	0.30	-3.2
5,295,742	+	lysR	JDDGAC_27540	0.43	+0.7
5,295,742	+	lysR	JDDGAC_27540	0.43	-0.1
5,295,742	+	lysR	JDDGAC_27540	0.43	+1.4
5,295,755	+	lysR	JDDGAC_27540	0.44	-1.2
5,295,835	+	lysR	JDDGAC_27540	0.53	-0.0
5,295,883	+	lysR	JDDGAC_27540	0.58	-1.0
5,295,900	+	lysR	JDDGAC_27540	0.60	-0.8
5,295,926	-	lysR	JDDGAC_27540	0.63	+0.0