Strain Fitness in Escherichia coli ECRC98 around JDDGAC_24370

Experiment: GB_JK32

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmltB and pncC are separated by 144 nucleotidespncC and recA are separated by 79 nucleotidesrecA and recX are separated by 67 nucleotidesrecX and alaS are separated by 127 nucleotides JDDGAC_24360: mltB - lytic murein transglycosylase B, at 4,671,029 to 4,672,219 mltB JDDGAC_24365: pncC - nicotinamide-nucleotide amidase, at 4,672,364 to 4,672,861 pncC JDDGAC_24370: recA - recombinase RecA, at 4,672,941 to 4,674,002 recA JDDGAC_24375: recX - recombination regulator RecX, at 4,674,070 to 4,674,570 recX JDDGAC_24380: alaS - alanine--tRNA ligase, at 4,674,698 to 4,677,328 alaS Position (kb) 4672 4673 4674 4675Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4672.112 kb on + strandat 4672.130 kb on + strandat 4672.130 kb on + strandat 4672.156 kb on + strandat 4672.186 kb on - strandat 4672.221 kb on + strandat 4672.222 kb on - strandat 4672.324 kb on + strandat 4672.339 kb on - strandat 4672.389 kb on + strandat 4672.529 kb on + strand, within pncCat 4672.529 kb on + strand, within pncCat 4672.530 kb on - strand, within pncCat 4672.530 kb on - strand, within pncCat 4672.530 kb on - strand, within pncCat 4672.530 kb on - strand, within pncCat 4672.534 kb on + strand, within pncCat 4672.627 kb on - strand, within pncCat 4672.655 kb on + strand, within pncCat 4672.655 kb on + strand, within pncCat 4672.656 kb on - strand, within pncCat 4672.666 kb on + strand, within pncCat 4672.667 kb on - strand, within pncCat 4672.667 kb on - strand, within pncCat 4672.667 kb on - strand, within pncCat 4672.849 kb on - strandat 4674.016 kb on + strandat 4674.051 kb on + strandat 4674.051 kb on + strandat 4674.058 kb on + strandat 4674.058 kb on + strandat 4674.058 kb on + strandat 4674.059 kb on - strandat 4674.059 kb on - strandat 4674.059 kb on - strandat 4674.100 kb on + strandat 4674.100 kb on + strandat 4674.100 kb on + strandat 4674.100 kb on + strandat 4674.100 kb on + strandat 4674.101 kb on - strandat 4674.101 kb on - strandat 4674.101 kb on - strandat 4674.101 kb on - strandat 4674.101 kb on - strandat 4674.189 kb on + strand, within recXat 4674.370 kb on - strand, within recXat 4674.515 kb on - strand, within recXat 4674.515 kb on - strand, within recXat 4674.546 kb on + strandat 4674.582 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction GB_JK32
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4,672,112 + -0.3
4,672,130 + -2.0
4,672,130 + +2.4
4,672,156 + -0.9
4,672,186 - -0.5
4,672,221 + +0.6
4,672,222 - -1.0
4,672,324 + +1.1
4,672,339 - +1.5
4,672,389 + -2.0
4,672,529 + pncC JDDGAC_24365 0.33 -1.0
4,672,529 + pncC JDDGAC_24365 0.33 +0.3
4,672,530 - pncC JDDGAC_24365 0.33 -1.1
4,672,530 - pncC JDDGAC_24365 0.33 +0.5
4,672,530 - pncC JDDGAC_24365 0.33 +1.6
4,672,530 - pncC JDDGAC_24365 0.33 +0.6
4,672,534 + pncC JDDGAC_24365 0.34 -0.1
4,672,627 - pncC JDDGAC_24365 0.53 +0.1
4,672,655 + pncC JDDGAC_24365 0.58 +1.2
4,672,655 + pncC JDDGAC_24365 0.58 +0.4
4,672,656 - pncC JDDGAC_24365 0.59 -1.8
4,672,666 + pncC JDDGAC_24365 0.61 -2.0
4,672,667 - pncC JDDGAC_24365 0.61 +1.0
4,672,667 - pncC JDDGAC_24365 0.61 -2.5
4,672,667 - pncC JDDGAC_24365 0.61 -0.7
4,672,849 - -1.6
4,674,016 + +0.5
4,674,051 + -2.3
4,674,051 + +1.0
4,674,058 + -2.2
4,674,058 + -0.3
4,674,058 + -0.2
4,674,059 - -0.4
4,674,059 - -2.1
4,674,059 - +2.5
4,674,100 + -2.7
4,674,100 + +0.3
4,674,100 + -1.2
4,674,100 + +0.5
4,674,100 + -0.2
4,674,101 - +0.7
4,674,101 - +1.8
4,674,101 - +0.4
4,674,101 - -3.1
4,674,101 - -1.3
4,674,189 + recX JDDGAC_24375 0.24 +2.2
4,674,370 - recX JDDGAC_24375 0.60 +0.6
4,674,515 - recX JDDGAC_24375 0.89 -1.8
4,674,515 - recX JDDGAC_24375 0.89 +0.6
4,674,546 + -1.9
4,674,582 - -1.4

Or see this region's nucleotide sequence