Strain Fitness in Escherichia coli ECRC98 around JDDGAC_19040

Experiment: GB_JK32

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	GB_JK32
3,622,568	+	escD	JDDGAC_19035	0.62	-0.5
3,622,569	-	escD	JDDGAC_19035	0.62	-2.5
3,622,800	-	escD	JDDGAC_19035	0.81	-0.1
3,622,819	-	escD	JDDGAC_19035	0.82	-1.8
3,622,883	+	escD	JDDGAC_19035	0.87	-1.6
3,622,884	-	escD	JDDGAC_19035	0.88	-0.9
3,622,884	-	escD	JDDGAC_19035	0.88	-0.7
3,622,939	+				-2.0
3,622,952	+				-2.0
3,623,164	+				-1.8
3,623,334	-	sepL	JDDGAC_19040	0.15	-2.0
3,623,526	-	sepL	JDDGAC_19040	0.33	-2.4
3,624,285	+				+0.2
3,624,289	+				-0.1
3,624,289	+				+1.2
3,624,297	+				-1.3
3,624,356	-	espA	JDDGAC_19045	0.11	+1.4
3,624,363	-	espA	JDDGAC_19045	0.12	-0.1
3,624,448	+	espA	JDDGAC_19045	0.27	-0.7
3,624,505	-	espA	JDDGAC_19045	0.37	-0.7
3,624,622	-	espA	JDDGAC_19045	0.57	-0.0
3,624,623	+	espA	JDDGAC_19045	0.57	-2.5
3,624,636	+	espA	JDDGAC_19045	0.59	-3.2
3,624,636	+	espA	JDDGAC_19045	0.59	-1.8
3,624,637	-	espA	JDDGAC_19045	0.60	-0.4
3,624,645	-	espA	JDDGAC_19045	0.61	+2.2
3,624,787	-	espA	JDDGAC_19045	0.85	-0.3
3,624,837	+				-1.0
3,624,864	+				+1.4
3,624,878	+				-0.5
3,624,882	+				-1.0
3,624,883	-				-1.4
3,624,883	-				-0.5
3,624,883	-				-0.7
3,624,894	-				+0.3
3,624,897	+				-0.2
3,624,931	-				+1.6
3,624,943	-				+0.0
3,624,996	+	espD	JDDGAC_19050	0.10	-1.6
3,624,996	+	espD	JDDGAC_19050	0.10	+0.7
3,625,067	+	espD	JDDGAC_19050	0.16	+0.4
3,625,067	+	espD	JDDGAC_19050	0.16	+0.1
3,625,098	+	espD	JDDGAC_19050	0.19	-1.0
3,625,099	-	espD	JDDGAC_19050	0.19	+0.9
3,625,099	-	espD	JDDGAC_19050	0.19	-0.1
3,625,102	-	espD	JDDGAC_19050	0.19	-0.5
3,625,102	-	espD	JDDGAC_19050	0.19	+1.2
3,625,131	+	espD	JDDGAC_19050	0.22	-1.4
3,625,131	+	espD	JDDGAC_19050	0.22	-1.6
3,625,172	-	espD	JDDGAC_19050	0.26	-1.2
3,625,172	-	espD	JDDGAC_19050	0.26	-0.8
3,625,172	-	espD	JDDGAC_19050	0.26	-0.2
3,625,177	+	espD	JDDGAC_19050	0.26	+2.4
3,625,177	+	espD	JDDGAC_19050	0.26	+2.1
3,625,177	+	espD	JDDGAC_19050	0.26	+0.3
3,625,178	-	espD	JDDGAC_19050	0.26	+1.3
3,625,178	-	espD	JDDGAC_19050	0.26	+1.6