Strain Fitness in Escherichia coli ECRC98 around JDDGAC_18640

Experiment: GB_JK32

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntdnaA and dnaN are separated by 4 nucleotidesdnaN and recF overlap by 1 nucleotides JDDGAC_18630: dnaA - chromosomal replication initiator protein DnaA, at 3,548,029 to 3,549,432 dnaA JDDGAC_18640: dnaN - DNA polymerase III subunit beta, at 3,549,437 to 3,550,537 dnaN JDDGAC_18645: recF - DNA replication/repair protein RecF, at 3,550,537 to 3,551,610 recF Position (kb) 3549 3550 3551Strain fitness (log2 ratio) -2 -1 0 1 2at 3549.430 kb on + strandat 3550.535 kb on + strandat 3550.611 kb on + strandat 3550.666 kb on + strand, within recFat 3550.666 kb on + strand, within recFat 3550.666 kb on + strand, within recFat 3550.667 kb on - strand, within recFat 3550.667 kb on - strand, within recFat 3550.667 kb on - strand, within recFat 3550.669 kb on - strand, within recFat 3550.790 kb on + strand, within recFat 3550.846 kb on - strand, within recFat 3550.887 kb on - strand, within recFat 3550.903 kb on - strand, within recFat 3550.903 kb on - strand, within recFat 3550.928 kb on - strand, within recFat 3551.058 kb on - strand, within recFat 3551.122 kb on - strand, within recFat 3551.152 kb on - strand, within recFat 3551.224 kb on + strand, within recFat 3551.224 kb on + strand, within recFat 3551.225 kb on - strand, within recFat 3551.225 kb on - strand, within recFat 3551.225 kb on - strand, within recFat 3551.225 kb on - strand, within recFat 3551.245 kb on - strand, within recFat 3551.272 kb on + strand, within recFat 3551.273 kb on - strand, within recFat 3551.303 kb on + strand, within recFat 3551.304 kb on - strand, within recFat 3551.304 kb on - strand, within recFat 3551.337 kb on + strand, within recFat 3551.337 kb on + strand, within recFat 3551.337 kb on + strand, within recFat 3551.337 kb on + strand, within recFat 3551.338 kb on - strand, within recFat 3551.338 kb on - strand, within recFat 3551.338 kb on - strand, within recFat 3551.358 kb on + strand, within recFat 3551.358 kb on + strand, within recFat 3551.379 kb on - strand, within recFat 3551.432 kb on - strand, within recFat 3551.439 kb on - strand, within recFat 3551.439 kb on - strand, within recF

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction GB_JK32
remove
3,549,430 + +0.3
3,550,535 + -0.1
3,550,611 + -0.7
3,550,666 + recF JDDGAC_18645 0.12 +0.5
3,550,666 + recF JDDGAC_18645 0.12 -0.9
3,550,666 + recF JDDGAC_18645 0.12 -0.2
3,550,667 - recF JDDGAC_18645 0.12 -0.9
3,550,667 - recF JDDGAC_18645 0.12 +1.1
3,550,667 - recF JDDGAC_18645 0.12 +0.8
3,550,669 - recF JDDGAC_18645 0.12 +1.5
3,550,790 + recF JDDGAC_18645 0.24 -2.2
3,550,846 - recF JDDGAC_18645 0.29 -0.3
3,550,887 - recF JDDGAC_18645 0.33 +1.5
3,550,903 - recF JDDGAC_18645 0.34 -0.9
3,550,903 - recF JDDGAC_18645 0.34 +0.7
3,550,928 - recF JDDGAC_18645 0.36 -0.3
3,551,058 - recF JDDGAC_18645 0.49 +2.1
3,551,122 - recF JDDGAC_18645 0.54 +0.1
3,551,152 - recF JDDGAC_18645 0.57 -0.1
3,551,224 + recF JDDGAC_18645 0.64 -1.5
3,551,224 + recF JDDGAC_18645 0.64 -0.7
3,551,225 - recF JDDGAC_18645 0.64 +1.4
3,551,225 - recF JDDGAC_18645 0.64 -0.8
3,551,225 - recF JDDGAC_18645 0.64 +1.2
3,551,225 - recF JDDGAC_18645 0.64 +1.6
3,551,245 - recF JDDGAC_18645 0.66 -0.1
3,551,272 + recF JDDGAC_18645 0.68 -0.6
3,551,273 - recF JDDGAC_18645 0.69 +1.1
3,551,303 + recF JDDGAC_18645 0.71 +0.8
3,551,304 - recF JDDGAC_18645 0.71 +2.7
3,551,304 - recF JDDGAC_18645 0.71 +0.9
3,551,337 + recF JDDGAC_18645 0.74 +0.4
3,551,337 + recF JDDGAC_18645 0.74 -0.3
3,551,337 + recF JDDGAC_18645 0.74 -1.8
3,551,337 + recF JDDGAC_18645 0.74 -0.6
3,551,338 - recF JDDGAC_18645 0.75 -1.6
3,551,338 - recF JDDGAC_18645 0.75 +0.6
3,551,338 - recF JDDGAC_18645 0.75 +2.2
3,551,358 + recF JDDGAC_18645 0.76 -1.6
3,551,358 + recF JDDGAC_18645 0.76 -0.9
3,551,379 - recF JDDGAC_18645 0.78 +2.2
3,551,432 - recF JDDGAC_18645 0.83 -2.2
3,551,439 - recF JDDGAC_18645 0.84 -2.3
3,551,439 - recF JDDGAC_18645 0.84 -1.5

Or see this region's nucleotide sequence