Strain Fitness in Escherichia coli ECRC98 around JDDGAC_14935

Experiment: GB_JK32

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntyjjP and yjjB overlap by 10 nucleotidesyjjB and dnaT are separated by 106 nucleotidesdnaT and dnaC are separated by 2 nucleotidesdnaC and yjjA are separated by 48 nucleotides JDDGAC_14925: yjjP - putative succinate transporter subunit YjjP, at 2,783,220 to 2,783,990 yjjP JDDGAC_14930: yjjB - threonine/serine exporter, at 2,783,981 to 2,784,454 yjjB JDDGAC_14935: dnaT - primosomal protein DnaT, at 2,784,561 to 2,785,100 dnaT JDDGAC_14940: dnaC - DNA replication protein DnaC, at 2,785,103 to 2,785,840 dnaC JDDGAC_14945: yjjA - Uncharacterized protein YjjA, at 2,785,889 to 2,786,383 yjjA Position (kb) 2784 2785 2786Strain fitness (log2 ratio) -2 -1 0 1 2at 2783.676 kb on + strand, within yjjPat 2783.676 kb on + strand, within yjjPat 2783.676 kb on + strand, within yjjPat 2783.677 kb on - strand, within yjjPat 2783.677 kb on - strand, within yjjPat 2783.679 kb on - strand, within yjjPat 2783.689 kb on + strand, within yjjPat 2783.792 kb on + strand, within yjjPat 2783.867 kb on + strand, within yjjPat 2783.874 kb on - strand, within yjjPat 2783.974 kb on + strandat 2784.111 kb on + strand, within yjjBat 2784.154 kb on + strand, within yjjBat 2784.203 kb on - strand, within yjjBat 2784.203 kb on - strand, within yjjBat 2784.203 kb on - strand, within yjjBat 2784.245 kb on - strand, within yjjBat 2784.370 kb on + strand, within yjjBat 2784.423 kb on + strandat 2784.424 kb on - strandat 2784.432 kb on - strandat 2785.835 kb on + strandat 2785.836 kb on - strandat 2785.838 kb on + strandat 2785.838 kb on + strandat 2785.839 kb on - strandat 2785.859 kb on + strandat 2785.859 kb on + strandat 2785.860 kb on - strandat 2786.055 kb on + strand, within yjjAat 2786.060 kb on - strand, within yjjAat 2786.069 kb on - strand, within yjjAat 2786.089 kb on - strand, within yjjAat 2786.098 kb on + strand, within yjjAat 2786.098 kb on + strand, within yjjAat 2786.099 kb on - strand, within yjjAat 2786.099 kb on - strand, within yjjA

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction GB_JK32
remove
2,783,676 + yjjP JDDGAC_14925 0.59 +0.8
2,783,676 + yjjP JDDGAC_14925 0.59 -1.0
2,783,676 + yjjP JDDGAC_14925 0.59 -0.3
2,783,677 - yjjP JDDGAC_14925 0.59 -1.8
2,783,677 - yjjP JDDGAC_14925 0.59 +2.5
2,783,679 - yjjP JDDGAC_14925 0.60 +0.6
2,783,689 + yjjP JDDGAC_14925 0.61 +1.1
2,783,792 + yjjP JDDGAC_14925 0.74 -0.0
2,783,867 + yjjP JDDGAC_14925 0.84 +0.2
2,783,874 - yjjP JDDGAC_14925 0.85 -0.5
2,783,974 + -2.6
2,784,111 + yjjB JDDGAC_14930 0.27 +1.0
2,784,154 + yjjB JDDGAC_14930 0.36 +1.4
2,784,203 - yjjB JDDGAC_14930 0.47 +0.6
2,784,203 - yjjB JDDGAC_14930 0.47 +1.8
2,784,203 - yjjB JDDGAC_14930 0.47 +0.6
2,784,245 - yjjB JDDGAC_14930 0.56 -0.7
2,784,370 + yjjB JDDGAC_14930 0.82 -1.9
2,784,423 + +1.4
2,784,424 - +1.3
2,784,432 - -1.2
2,785,835 + -1.8
2,785,836 - +0.2
2,785,838 + -2.3
2,785,838 + +1.9
2,785,839 - +0.3
2,785,859 + -0.5
2,785,859 + +1.7
2,785,860 - -0.4
2,786,055 + yjjA JDDGAC_14945 0.34 +1.0
2,786,060 - yjjA JDDGAC_14945 0.35 +0.2
2,786,069 - yjjA JDDGAC_14945 0.36 -2.0
2,786,089 - yjjA JDDGAC_14945 0.40 +0.3
2,786,098 + yjjA JDDGAC_14945 0.42 +1.5
2,786,098 + yjjA JDDGAC_14945 0.42 -0.5
2,786,099 - yjjA JDDGAC_14945 0.42 +0.2
2,786,099 - yjjA JDDGAC_14945 0.42 +0.5

Or see this region's nucleotide sequence