Experiment: GB_JK32
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yjjP and yjjB overlap by 10 nucleotides yjjB and dnaT are separated by 106 nucleotides dnaT and dnaC are separated by 2 nucleotides dnaC and yjjA are separated by 48 nucleotides
JDDGAC_14925: yjjP - putative succinate transporter subunit YjjP, at 2,783,220 to 2,783,990
yjjP
JDDGAC_14930: yjjB - threonine/serine exporter, at 2,783,981 to 2,784,454
yjjB
JDDGAC_14935: dnaT - primosomal protein DnaT, at 2,784,561 to 2,785,100
dnaT
JDDGAC_14940: dnaC - DNA replication protein DnaC, at 2,785,103 to 2,785,840
dnaC
JDDGAC_14945: yjjA - Uncharacterized protein YjjA, at 2,785,889 to 2,786,383
yjjA
Position (kb)
2784
2785
2786 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2783.676 kb on + strand, within yjjP at 2783.676 kb on + strand, within yjjP at 2783.676 kb on + strand, within yjjP at 2783.677 kb on - strand, within yjjP at 2783.677 kb on - strand, within yjjP at 2783.679 kb on - strand, within yjjP at 2783.689 kb on + strand, within yjjP at 2783.792 kb on + strand, within yjjP at 2783.867 kb on + strand, within yjjP at 2783.874 kb on - strand, within yjjP at 2783.974 kb on + strand at 2784.111 kb on + strand, within yjjB at 2784.154 kb on + strand, within yjjB at 2784.203 kb on - strand, within yjjB at 2784.203 kb on - strand, within yjjB at 2784.203 kb on - strand, within yjjB at 2784.245 kb on - strand, within yjjB at 2784.370 kb on + strand, within yjjB at 2784.423 kb on + strand at 2784.424 kb on - strand at 2784.432 kb on - strand at 2785.835 kb on + strand at 2785.836 kb on - strand at 2785.838 kb on + strand at 2785.838 kb on + strand at 2785.839 kb on - strand at 2785.859 kb on + strand at 2785.859 kb on + strand at 2785.860 kb on - strand at 2786.055 kb on + strand, within yjjA at 2786.060 kb on - strand, within yjjA at 2786.069 kb on - strand, within yjjA at 2786.089 kb on - strand, within yjjA at 2786.098 kb on + strand, within yjjA at 2786.098 kb on + strand, within yjjA at 2786.099 kb on - strand, within yjjA at 2786.099 kb on - strand, within yjjA
Per-strain Table
Position Strand Gene LocusTag Fraction GB_JK32 remove 2,783,676 + yjjP JDDGAC_14925 0.59 +0.8 2,783,676 + yjjP JDDGAC_14925 0.59 -1.0 2,783,676 + yjjP JDDGAC_14925 0.59 -0.3 2,783,677 - yjjP JDDGAC_14925 0.59 -1.8 2,783,677 - yjjP JDDGAC_14925 0.59 +2.5 2,783,679 - yjjP JDDGAC_14925 0.60 +0.6 2,783,689 + yjjP JDDGAC_14925 0.61 +1.1 2,783,792 + yjjP JDDGAC_14925 0.74 -0.0 2,783,867 + yjjP JDDGAC_14925 0.84 +0.2 2,783,874 - yjjP JDDGAC_14925 0.85 -0.5 2,783,974 + -2.6 2,784,111 + yjjB JDDGAC_14930 0.27 +1.0 2,784,154 + yjjB JDDGAC_14930 0.36 +1.4 2,784,203 - yjjB JDDGAC_14930 0.47 +0.6 2,784,203 - yjjB JDDGAC_14930 0.47 +1.8 2,784,203 - yjjB JDDGAC_14930 0.47 +0.6 2,784,245 - yjjB JDDGAC_14930 0.56 -0.7 2,784,370 + yjjB JDDGAC_14930 0.82 -1.9 2,784,423 + +1.4 2,784,424 - +1.3 2,784,432 - -1.2 2,785,835 + -1.8 2,785,836 - +0.2 2,785,838 + -2.3 2,785,838 + +1.9 2,785,839 - +0.3 2,785,859 + -0.5 2,785,859 + +1.7 2,785,860 - -0.4 2,786,055 + yjjA JDDGAC_14945 0.34 +1.0 2,786,060 - yjjA JDDGAC_14945 0.35 +0.2 2,786,069 - yjjA JDDGAC_14945 0.36 -2.0 2,786,089 - yjjA JDDGAC_14945 0.40 +0.3 2,786,098 + yjjA JDDGAC_14945 0.42 +1.5 2,786,098 + yjjA JDDGAC_14945 0.42 -0.5 2,786,099 - yjjA JDDGAC_14945 0.42 +0.2 2,786,099 - yjjA JDDGAC_14945 0.42 +0.5
Or see this region's nucleotide sequence