Experiment: GB_JK32
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rpmE2-2 and JDDGAC_07845 are separated by 424 nucleotides JDDGAC_07845 and JDDGAC_07850 are separated by 61 nucleotides JDDGAC_07850 and ureG are separated by 255 nucleotides ureG and ureF are separated by 11 nucleotides
JDDGAC_07840: rpmE2-2 - type B 50S ribosomal protein L31, at 1,357,268 to 1,357,531
rpmE2-2
JDDGAC_07845: JDDGAC_07845 - complement resistance protein TraT, at 1,357,956 to 1,358,084
_07845
JDDGAC_07850: JDDGAC_07850 - Transposase, at 1,358,146 to 1,358,487
_07850
JDDGAC_07855: ureG - urease accessory protein UreG, at 1,358,743 to 1,359,360
ureG
JDDGAC_07860: ureF - Urease accessory protein UreF, at 1,359,372 to 1,360,046
ureF
Position (kb) 1358
1359 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1357.201 kb on - strand at 1357.201 kb on - strand at 1357.202 kb on + strand at 1357.402 kb on - strand, within rpmE2-2 at 1357.408 kb on - strand, within rpmE2-2 at 1357.496 kb on + strand, within rpmE2-2 at 1357.497 kb on - strand, within rpmE2-2 at 1357.502 kb on - strand, within rpmE2-2 at 1357.548 kb on + strand at 1357.572 kb on - strand at 1357.646 kb on - strand at 1357.646 kb on - strand at 1357.649 kb on + strand at 1357.753 kb on + strand at 1357.772 kb on - strand at 1357.773 kb on + strand at 1357.874 kb on - strand at 1357.874 kb on - strand at 1358.267 kb on + strand, within JDDGAC_07850 at 1358.391 kb on + strand, within JDDGAC_07850 at 1358.391 kb on + strand, within JDDGAC_07850 at 1358.392 kb on - strand, within JDDGAC_07850 at 1358.393 kb on + strand, within JDDGAC_07850 at 1358.394 kb on - strand, within JDDGAC_07850 at 1358.412 kb on - strand, within JDDGAC_07850 at 1358.563 kb on + strand at 1358.563 kb on + strand at 1358.563 kb on + strand at 1358.563 kb on + strand at 1358.563 kb on + strand at 1358.564 kb on - strand at 1358.645 kb on - strand at 1358.648 kb on + strand at 1358.745 kb on - strand at 1358.844 kb on + strand, within ureG at 1358.889 kb on - strand, within ureG at 1358.908 kb on - strand, within ureG at 1358.983 kb on + strand, within ureG at 1358.983 kb on + strand, within ureG at 1358.984 kb on - strand, within ureG at 1358.984 kb on - strand, within ureG at 1358.990 kb on + strand, within ureG at 1358.990 kb on + strand, within ureG at 1358.990 kb on + strand, within ureG at 1358.990 kb on + strand, within ureG at 1358.990 kb on + strand, within ureG at 1358.991 kb on - strand, within ureG at 1358.991 kb on - strand, within ureG at 1358.991 kb on - strand, within ureG at 1358.991 kb on - strand, within ureG at 1358.991 kb on - strand, within ureG at 1358.991 kb on - strand, within ureG at 1358.991 kb on - strand, within ureG at 1358.992 kb on + strand, within ureG at 1358.992 kb on + strand, within ureG at 1358.993 kb on - strand, within ureG at 1358.993 kb on - strand, within ureG at 1358.993 kb on - strand, within ureG at 1358.998 kb on - strand, within ureG at 1359.374 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction GB_JK32 remove 1,357,201 - -0.0 1,357,201 - +1.1 1,357,202 + +2.9 1,357,402 - rpmE2-2 JDDGAC_07840 0.51 +2.5 1,357,408 - rpmE2-2 JDDGAC_07840 0.53 +1.0 1,357,496 + rpmE2-2 JDDGAC_07840 0.86 -1.6 1,357,497 - rpmE2-2 JDDGAC_07840 0.87 +1.3 1,357,502 - rpmE2-2 JDDGAC_07840 0.89 -2.5 1,357,548 + -0.9 1,357,572 - -1.5 1,357,646 - +2.3 1,357,646 - -0.9 1,357,649 + -2.2 1,357,753 + -0.3 1,357,772 - -1.6 1,357,773 + -0.7 1,357,874 - -1.1 1,357,874 - -2.4 1,358,267 + JDDGAC_07850 0.35 -0.7 1,358,391 + JDDGAC_07850 0.72 +1.3 1,358,391 + JDDGAC_07850 0.72 +2.3 1,358,392 - JDDGAC_07850 0.72 +0.7 1,358,393 + JDDGAC_07850 0.72 +0.3 1,358,394 - JDDGAC_07850 0.73 -2.6 1,358,412 - JDDGAC_07850 0.78 -2.9 1,358,563 + +0.6 1,358,563 + +0.4 1,358,563 + +0.2 1,358,563 + +1.6 1,358,563 + +0.7 1,358,564 - -1.6 1,358,645 - +0.2 1,358,648 + -0.0 1,358,745 - +0.1 1,358,844 + ureG JDDGAC_07855 0.16 -0.4 1,358,889 - ureG JDDGAC_07855 0.24 -2.1 1,358,908 - ureG JDDGAC_07855 0.27 -0.3 1,358,983 + ureG JDDGAC_07855 0.39 -0.4 1,358,983 + ureG JDDGAC_07855 0.39 -1.1 1,358,984 - ureG JDDGAC_07855 0.39 +0.9 1,358,984 - ureG JDDGAC_07855 0.39 -0.4 1,358,990 + ureG JDDGAC_07855 0.40 -1.3 1,358,990 + ureG JDDGAC_07855 0.40 -1.1 1,358,990 + ureG JDDGAC_07855 0.40 -2.0 1,358,990 + ureG JDDGAC_07855 0.40 +0.9 1,358,990 + ureG JDDGAC_07855 0.40 -0.9 1,358,991 - ureG JDDGAC_07855 0.40 -0.3 1,358,991 - ureG JDDGAC_07855 0.40 +0.4 1,358,991 - ureG JDDGAC_07855 0.40 -1.6 1,358,991 - ureG JDDGAC_07855 0.40 +0.8 1,358,991 - ureG JDDGAC_07855 0.40 -0.9 1,358,991 - ureG JDDGAC_07855 0.40 -0.2 1,358,991 - ureG JDDGAC_07855 0.40 -0.0 1,358,992 + ureG JDDGAC_07855 0.40 -0.2 1,358,992 + ureG JDDGAC_07855 0.40 +0.7 1,358,993 - ureG JDDGAC_07855 0.40 -1.1 1,358,993 - ureG JDDGAC_07855 0.40 -1.3 1,358,993 - ureG JDDGAC_07855 0.40 -2.4 1,358,998 - ureG JDDGAC_07855 0.41 -3.5 1,359,374 - -1.3
Or see this region's nucleotide sequence