Strain Fitness in Escherichia coli ECRC98 around JDDGAC_07565

Experiment: GB_JK32

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntJDDGAC_07555 and JDDGAC_07560 overlap by 4 nucleotidesJDDGAC_07560 and JDDGAC_07565 are separated by 46 nucleotidesJDDGAC_07565 and JDDGAC_07570 are separated by 49 nucleotidesJDDGAC_07570 and JDDGAC_07575 overlap by 1 nucleotidesJDDGAC_07575 and yeeS are separated by 62 nucleotidesyeeS and JDDGAC_07585 are separated by 15 nucleotides JDDGAC_07555: JDDGAC_07555 - DUF5983 domain-containing protein, at 1,309,502 to 1,309,993 _07555 JDDGAC_07560: JDDGAC_07560 - toxin, at 1,309,990 to 1,310,364 _07560 JDDGAC_07565: JDDGAC_07565 - antitoxin, at 1,310,411 to 1,310,785 _07565 JDDGAC_07570: JDDGAC_07570 - Phage-related protein, at 1,310,835 to 1,310,948 _07570 JDDGAC_07575: JDDGAC_07575 - DUF987 domain-containing protein, at 1,310,948 to 1,311,169 _07575 JDDGAC_07580: yeeS - UPF0758 protein YeeS, at 1,311,232 to 1,311,708 yeeS JDDGAC_07585: JDDGAC_07585 - restriction endonuclease, at 1,311,724 to 1,312,209 _07585 Position (kb) 1310 1311Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1309.907 kb on - strand, within JDDGAC_07555at 1310.091 kb on + strand, within JDDGAC_07560at 1310.091 kb on + strand, within JDDGAC_07560at 1310.091 kb on + strand, within JDDGAC_07560at 1310.098 kb on + strand, within JDDGAC_07560at 1310.102 kb on - strand, within JDDGAC_07560at 1310.264 kb on + strand, within JDDGAC_07560at 1310.338 kb on + strandat 1310.339 kb on - strandat 1310.339 kb on - strandat 1310.367 kb on + strandat 1310.367 kb on + strandat 1310.368 kb on - strandat 1310.378 kb on + strandat 1310.391 kb on + strandat 1310.392 kb on - strandat 1310.413 kb on - strandat 1310.454 kb on + strand, within JDDGAC_07565at 1310.460 kb on + strand, within JDDGAC_07565at 1310.521 kb on + strand, within JDDGAC_07565at 1310.521 kb on + strand, within JDDGAC_07565at 1310.607 kb on + strand, within JDDGAC_07565at 1310.658 kb on + strand, within JDDGAC_07565at 1310.763 kb on - strandat 1310.812 kb on - strandat 1310.870 kb on - strand, within JDDGAC_07570at 1310.870 kb on - strand, within JDDGAC_07570at 1310.979 kb on + strand, within JDDGAC_07575at 1311.055 kb on + strand, within JDDGAC_07575at 1311.057 kb on + strand, within JDDGAC_07575at 1311.057 kb on + strand, within JDDGAC_07575at 1311.057 kb on + strand, within JDDGAC_07575at 1311.057 kb on + strand, within JDDGAC_07575at 1311.057 kb on + strand, within JDDGAC_07575at 1311.057 kb on + strand, within JDDGAC_07575at 1311.058 kb on - strand, within JDDGAC_07575at 1311.058 kb on - strand, within JDDGAC_07575at 1311.084 kb on + strand, within JDDGAC_07575at 1311.088 kb on + strand, within JDDGAC_07575at 1311.136 kb on + strand, within JDDGAC_07575at 1311.197 kb on - strandat 1311.420 kb on - strand, within yeeS

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Per-strain Table

Position Strand Gene LocusTag Fraction GB_JK32
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1,309,907 - JDDGAC_07555 0.82 +1.8
1,310,091 + JDDGAC_07560 0.27 -0.9
1,310,091 + JDDGAC_07560 0.27 -0.6
1,310,091 + JDDGAC_07560 0.27 +0.5
1,310,098 + JDDGAC_07560 0.29 -0.3
1,310,102 - JDDGAC_07560 0.30 -2.8
1,310,264 + JDDGAC_07560 0.73 -1.9
1,310,338 + -1.1
1,310,339 - +0.3
1,310,339 - +0.5
1,310,367 + +0.5
1,310,367 + +1.3
1,310,368 - -0.3
1,310,378 + +0.1
1,310,391 + -0.9
1,310,392 - -1.8
1,310,413 - -0.5
1,310,454 + JDDGAC_07565 0.11 -0.9
1,310,460 + JDDGAC_07565 0.13 -1.4
1,310,521 + JDDGAC_07565 0.29 -0.5
1,310,521 + JDDGAC_07565 0.29 -1.4
1,310,607 + JDDGAC_07565 0.52 -1.6
1,310,658 + JDDGAC_07565 0.66 -2.3
1,310,763 - +4.1
1,310,812 - +1.7
1,310,870 - JDDGAC_07570 0.31 -0.6
1,310,870 - JDDGAC_07570 0.31 -0.7
1,310,979 + JDDGAC_07575 0.14 +0.3
1,311,055 + JDDGAC_07575 0.48 -0.0
1,311,057 + JDDGAC_07575 0.49 +0.4
1,311,057 + JDDGAC_07575 0.49 +0.2
1,311,057 + JDDGAC_07575 0.49 +0.5
1,311,057 + JDDGAC_07575 0.49 +0.5
1,311,057 + JDDGAC_07575 0.49 -0.9
1,311,057 + JDDGAC_07575 0.49 -0.3
1,311,058 - JDDGAC_07575 0.50 -0.8
1,311,058 - JDDGAC_07575 0.50 +0.3
1,311,084 + JDDGAC_07575 0.61 +0.7
1,311,088 + JDDGAC_07575 0.63 +0.5
1,311,136 + JDDGAC_07575 0.85 -0.6
1,311,197 - +2.1
1,311,420 - yeeS JDDGAC_07580 0.39 +1.0

Or see this region's nucleotide sequence