Strain Fitness in Escherichia coli ECRC98 around JDDGAC_07205

Experiment: GB_JK32

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntycfH and holB are separated by 10 nucleotidesholB and tmk overlap by 4 nucleotidestmk and yceG overlap by 11 nucleotides JDDGAC_07200: ycfH - metal-dependent hydrolase, at 1,248,252 to 1,249,049 ycfH JDDGAC_07205: holB - DNA polymerase III subunit delta', at 1,249,060 to 1,250,064 holB JDDGAC_07210: tmk - dTMP kinase, at 1,250,061 to 1,250,702 tmk JDDGAC_07215: yceG - cell division protein YceG, at 1,250,692 to 1,251,714 yceG Position (kb) 1249 1250 1251Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1248.154 kb on + strandat 1248.155 kb on - strandat 1248.227 kb on - strandat 1248.470 kb on - strand, within ycfHat 1248.470 kb on - strand, within ycfHat 1248.589 kb on - strand, within ycfHat 1248.734 kb on + strand, within ycfHat 1248.735 kb on - strand, within ycfHat 1248.748 kb on + strand, within ycfHat 1248.826 kb on + strand, within ycfHat 1248.907 kb on - strand, within ycfHat 1249.100 kb on + strandat 1249.101 kb on - strandat 1249.101 kb on - strandat 1250.713 kb on - strandat 1250.767 kb on - strandat 1250.860 kb on - strand, within yceG

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Per-strain Table

Position Strand Gene LocusTag Fraction GB_JK32
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1,248,154 + +2.2
1,248,155 - -0.4
1,248,227 - -0.1
1,248,470 - ycfH JDDGAC_07200 0.27 +1.0
1,248,470 - ycfH JDDGAC_07200 0.27 +0.6
1,248,589 - ycfH JDDGAC_07200 0.42 -1.6
1,248,734 + ycfH JDDGAC_07200 0.60 -0.5
1,248,735 - ycfH JDDGAC_07200 0.61 -0.7
1,248,748 + ycfH JDDGAC_07200 0.62 -1.8
1,248,826 + ycfH JDDGAC_07200 0.72 +0.3
1,248,907 - ycfH JDDGAC_07200 0.82 +3.1
1,249,100 + -0.1
1,249,101 - -1.3
1,249,101 - +1.4
1,250,713 - +1.3
1,250,767 - -0.4
1,250,860 - yceG JDDGAC_07215 0.16 +0.2

Or see this region's nucleotide sequence