Strain Fitness in Escherichia coli ECRC98 around JDDGAC_07025

Experiment: GB_JK32

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntJDDGAC_07010 and JDDGAC_07015 overlap by 14 nucleotidesJDDGAC_07015 and JDDGAC_07020 overlap by 47 nucleotidesJDDGAC_07020 and JDDGAC_07025 overlap by 11 nucleotidesJDDGAC_07025 and JDDGAC_07030 overlap by 4 nucleotidesJDDGAC_07030 and JDDGAC_07035 overlap by 4 nucleotides JDDGAC_07010: JDDGAC_07010 - Ead/Ea22-like protein, at 1,214,993 to 1,215,430 _07010 JDDGAC_07015: JDDGAC_07015 - hypothetical protein, at 1,215,417 to 1,215,734 _07015 JDDGAC_07020: JDDGAC_07020 - DUF4752 domain-containing protein, at 1,215,688 to 1,216,005 _07020 JDDGAC_07025: JDDGAC_07025 - DUF4406 domain-containing protein, at 1,215,995 to 1,216,297 _07025 JDDGAC_07030: JDDGAC_07030 - DNA-binding protein, at 1,216,294 to 1,216,611 _07030 JDDGAC_07035: JDDGAC_07035 - DUF1627 domain-containing protein, at 1,216,608 to 1,217,324 _07035 Position (kb) 1215 1216 1217Strain fitness (log2 ratio) -2 -1 0 1 2at 1215.414 kb on + strandat 1215.492 kb on - strand, within JDDGAC_07015at 1215.514 kb on + strand, within JDDGAC_07015at 1215.539 kb on + strand, within JDDGAC_07015at 1215.612 kb on - strand, within JDDGAC_07015at 1215.634 kb on - strand, within JDDGAC_07015at 1215.634 kb on - strand, within JDDGAC_07015at 1215.664 kb on + strand, within JDDGAC_07015at 1215.664 kb on + strand, within JDDGAC_07015at 1215.665 kb on - strand, within JDDGAC_07015at 1215.683 kb on - strand, within JDDGAC_07015at 1215.683 kb on - strand, within JDDGAC_07015at 1215.683 kb on - strand, within JDDGAC_07015at 1215.699 kb on + strandat 1215.700 kb on - strandat 1215.712 kb on - strandat 1215.752 kb on + strand, within JDDGAC_07020at 1215.754 kb on + strand, within JDDGAC_07020at 1215.754 kb on + strand, within JDDGAC_07020at 1215.755 kb on - strand, within JDDGAC_07020at 1215.763 kb on + strand, within JDDGAC_07020at 1215.764 kb on - strand, within JDDGAC_07020at 1215.764 kb on - strand, within JDDGAC_07020at 1215.764 kb on - strand, within JDDGAC_07020at 1215.764 kb on - strand, within JDDGAC_07020at 1215.767 kb on - strand, within JDDGAC_07020at 1215.767 kb on - strand, within JDDGAC_07020at 1215.767 kb on - strand, within JDDGAC_07020at 1215.767 kb on - strand, within JDDGAC_07020at 1215.767 kb on - strand, within JDDGAC_07020at 1215.931 kb on - strand, within JDDGAC_07020at 1215.931 kb on - strand, within JDDGAC_07020at 1215.935 kb on + strand, within JDDGAC_07020at 1215.935 kb on + strand, within JDDGAC_07020at 1216.102 kb on - strand, within JDDGAC_07025at 1216.147 kb on - strand, within JDDGAC_07025at 1216.282 kb on - strandat 1216.282 kb on - strandat 1216.282 kb on - strandat 1216.282 kb on - strandat 1216.319 kb on + strandat 1216.325 kb on + strandat 1216.325 kb on + strandat 1216.325 kb on + strandat 1216.326 kb on - strand, within JDDGAC_07030at 1216.326 kb on - strand, within JDDGAC_07030at 1216.326 kb on - strand, within JDDGAC_07030at 1216.326 kb on - strand, within JDDGAC_07030at 1216.330 kb on - strand, within JDDGAC_07030at 1216.330 kb on - strand, within JDDGAC_07030at 1216.448 kb on + strand, within JDDGAC_07030at 1216.638 kb on - strandat 1216.710 kb on - strand, within JDDGAC_07035at 1216.971 kb on - strand, within JDDGAC_07035

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Per-strain Table

Position Strand Gene LocusTag Fraction GB_JK32
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1,215,414 + -1.7
1,215,492 - JDDGAC_07015 0.24 +1.0
1,215,514 + JDDGAC_07015 0.31 +2.5
1,215,539 + JDDGAC_07015 0.38 +0.7
1,215,612 - JDDGAC_07015 0.61 +0.9
1,215,634 - JDDGAC_07015 0.68 -0.5
1,215,634 - JDDGAC_07015 0.68 +0.9
1,215,664 + JDDGAC_07015 0.78 -1.2
1,215,664 + JDDGAC_07015 0.78 -2.0
1,215,665 - JDDGAC_07015 0.78 -2.3
1,215,683 - JDDGAC_07015 0.84 +0.3
1,215,683 - JDDGAC_07015 0.84 +0.8
1,215,683 - JDDGAC_07015 0.84 +0.9
1,215,699 + +0.6
1,215,700 - +1.5
1,215,712 - +0.7
1,215,752 + JDDGAC_07020 0.20 -0.2
1,215,754 + JDDGAC_07020 0.21 +2.4
1,215,754 + JDDGAC_07020 0.21 +0.5
1,215,755 - JDDGAC_07020 0.21 -1.6
1,215,763 + JDDGAC_07020 0.24 +0.1
1,215,764 - JDDGAC_07020 0.24 -2.7
1,215,764 - JDDGAC_07020 0.24 -1.1
1,215,764 - JDDGAC_07020 0.24 +1.3
1,215,764 - JDDGAC_07020 0.24 +0.5
1,215,767 - JDDGAC_07020 0.25 -0.8
1,215,767 - JDDGAC_07020 0.25 +1.3
1,215,767 - JDDGAC_07020 0.25 -0.7
1,215,767 - JDDGAC_07020 0.25 -1.3
1,215,767 - JDDGAC_07020 0.25 -0.2
1,215,931 - JDDGAC_07020 0.76 -2.4
1,215,931 - JDDGAC_07020 0.76 +1.0
1,215,935 + JDDGAC_07020 0.78 -0.8
1,215,935 + JDDGAC_07020 0.78 -0.9
1,216,102 - JDDGAC_07025 0.35 -1.3
1,216,147 - JDDGAC_07025 0.50 -2.7
1,216,282 - +1.3
1,216,282 - -0.8
1,216,282 - -0.5
1,216,282 - +0.5
1,216,319 + +0.8
1,216,325 + -0.8
1,216,325 + -0.5
1,216,325 + -0.4
1,216,326 - JDDGAC_07030 0.10 -1.2
1,216,326 - JDDGAC_07030 0.10 +0.1
1,216,326 - JDDGAC_07030 0.10 -1.9
1,216,326 - JDDGAC_07030 0.10 -0.7
1,216,330 - JDDGAC_07030 0.11 -2.0
1,216,330 - JDDGAC_07030 0.11 -2.3
1,216,448 + JDDGAC_07030 0.48 +0.6
1,216,638 - -2.4
1,216,710 - JDDGAC_07035 0.14 -2.3
1,216,971 - JDDGAC_07035 0.51 +0.5

Or see this region's nucleotide sequence