Experiment: GB_JK32
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gp45 and gp46 overlap by 8 nucleotides gp46 and jayE overlap by 1 nucleotides jayE and ymfQ overlap by 10 nucleotides ymfQ and JDDGAC_05735 overlap by 1 nucleotides
JDDGAC_05715: gp45 - phage baseplate assembly protein V, at 996,736 to 997,350
gp45
JDDGAC_05720: gp46 - Phage GP46 family protein, at 997,343 to 997,780
gp46
JDDGAC_05725: jayE - Baseplate J-like protein, at 997,780 to 998,862
jayE
JDDGAC_05730: ymfQ - Bacteriophage Mu-like, Gp48, at 998,853 to 999,413
ymfQ
JDDGAC_05735: JDDGAC_05735 - phage tail protein, at 999,413 to 1,000,324
_05735
Position (kb) 997
998
999 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 997.039 kb on - strand, within gp45 at 997.049 kb on - strand, within gp45 at 997.069 kb on - strand, within gp45 at 997.070 kb on + strand, within gp45 at 997.070 kb on + strand, within gp45 at 997.071 kb on - strand, within gp45 at 997.149 kb on + strand, within gp45 at 997.173 kb on + strand, within gp45 at 997.174 kb on - strand, within gp45 at 997.285 kb on + strand, within gp45 at 997.441 kb on + strand, within gp46 at 997.668 kb on + strand, within gp46 at 997.668 kb on + strand, within gp46 at 997.669 kb on - strand, within gp46 at 997.669 kb on - strand, within gp46 at 997.765 kb on + strand at 997.786 kb on + strand at 998.170 kb on - strand, within jayE at 998.531 kb on - strand, within jayE at 998.676 kb on - strand, within jayE at 998.676 kb on - strand, within jayE at 998.701 kb on + strand, within jayE at 998.701 kb on + strand, within jayE at 998.701 kb on + strand, within jayE at 998.704 kb on - strand, within jayE at 998.729 kb on + strand, within jayE at 998.824 kb on - strand at 999.083 kb on + strand, within ymfQ at 999.248 kb on + strand, within ymfQ at 999.379 kb on + strand at 999.412 kb on - strand at 999.412 kb on - strand at 999.476 kb on - strand at 999.476 kb on - strand at 999.547 kb on + strand, within JDDGAC_05735 at 999.781 kb on + strand, within JDDGAC_05735 at 999.842 kb on - strand, within JDDGAC_05735 at 999.854 kb on + strand, within JDDGAC_05735
Per-strain Table
Position Strand Gene LocusTag Fraction GB_JK32 remove 997,039 - gp45 JDDGAC_05715 0.49 +0.5 997,049 - gp45 JDDGAC_05715 0.51 -0.0 997,069 - gp45 JDDGAC_05715 0.54 -0.7 997,070 + gp45 JDDGAC_05715 0.54 +2.8 997,070 + gp45 JDDGAC_05715 0.54 +1.9 997,071 - gp45 JDDGAC_05715 0.54 +0.2 997,149 + gp45 JDDGAC_05715 0.67 -0.3 997,173 + gp45 JDDGAC_05715 0.71 -1.1 997,174 - gp45 JDDGAC_05715 0.71 +1.9 997,285 + gp45 JDDGAC_05715 0.89 +0.3 997,441 + gp46 JDDGAC_05720 0.22 -0.1 997,668 + gp46 JDDGAC_05720 0.74 -0.4 997,668 + gp46 JDDGAC_05720 0.74 +0.8 997,669 - gp46 JDDGAC_05720 0.74 +1.4 997,669 - gp46 JDDGAC_05720 0.74 -1.1 997,765 + +2.5 997,786 + -0.3 998,170 - jayE JDDGAC_05725 0.36 +1.9 998,531 - jayE JDDGAC_05725 0.69 -1.8 998,676 - jayE JDDGAC_05725 0.83 -1.2 998,676 - jayE JDDGAC_05725 0.83 -1.1 998,701 + jayE JDDGAC_05725 0.85 -1.9 998,701 + jayE JDDGAC_05725 0.85 -1.8 998,701 + jayE JDDGAC_05725 0.85 +0.3 998,704 - jayE JDDGAC_05725 0.85 +0.1 998,729 + jayE JDDGAC_05725 0.88 +0.5 998,824 - +0.9 999,083 + ymfQ JDDGAC_05730 0.41 +3.4 999,248 + ymfQ JDDGAC_05730 0.70 -1.0 999,379 + -0.7 999,412 - -1.8 999,412 - +2.0 999,476 - -1.1 999,476 - +2.3 999,547 + JDDGAC_05735 0.15 -0.0 999,781 + JDDGAC_05735 0.40 +1.5 999,842 - JDDGAC_05735 0.47 +0.6 999,854 + JDDGAC_05735 0.48 -2.3
Or see this region's nucleotide sequence