Experiment: GB_JK32
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_05610 and JDDGAC_05615 overlap by 20 nucleotides JDDGAC_05615 and JDDGAC_05620 overlap by 4 nucleotides JDDGAC_05620 and JDDGAC_05625 are separated by 2 nucleotides JDDGAC_05625 and JDDGAC_05630 overlap by 1 nucleotides
JDDGAC_05610: JDDGAC_05610 - conjugal transfer protein TraR, at 979,193 to 979,486
_05610
JDDGAC_05615: JDDGAC_05615 - DUF2730 domain-containing protein, at 979,467 to 979,775
_05615
JDDGAC_05620: JDDGAC_05620 - hypothetical protein, at 979,772 to 980,062
_05620
JDDGAC_05625: JDDGAC_05625 - Bacteriophage Mu, Gp27, at 980,065 to 980,646
_05625
JDDGAC_05630: JDDGAC_05630 - putative terminase, large subunit gp28, at 980,646 to 982,310
_05630
Position (kb) 980
981 Strain fitness (log2 ratio) -2
-1
0
1
2 at 979.111 kb on + strand at 979.111 kb on + strand at 979.111 kb on + strand at 979.112 kb on - strand at 979.112 kb on - strand at 979.334 kb on - strand, within JDDGAC_05610 at 979.492 kb on - strand at 979.909 kb on + strand, within JDDGAC_05620 at 979.916 kb on - strand, within JDDGAC_05620 at 979.916 kb on - strand, within JDDGAC_05620 at 980.124 kb on + strand, within JDDGAC_05625 at 980.446 kb on - strand, within JDDGAC_05625 at 980.457 kb on + strand, within JDDGAC_05625 at 980.512 kb on - strand, within JDDGAC_05625 at 980.616 kb on + strand at 980.619 kb on + strand at 980.772 kb on - strand at 980.903 kb on + strand, within JDDGAC_05630 at 980.903 kb on + strand, within JDDGAC_05630 at 980.931 kb on + strand, within JDDGAC_05630 at 980.931 kb on + strand, within JDDGAC_05630 at 980.964 kb on + strand, within JDDGAC_05630 at 980.964 kb on + strand, within JDDGAC_05630 at 980.967 kb on - strand, within JDDGAC_05630 at 981.072 kb on + strand, within JDDGAC_05630 at 981.272 kb on + strand, within JDDGAC_05630 at 981.378 kb on - strand, within JDDGAC_05630 at 981.513 kb on + strand, within JDDGAC_05630 at 981.514 kb on - strand, within JDDGAC_05630 at 981.514 kb on - strand, within JDDGAC_05630 at 981.514 kb on - strand, within JDDGAC_05630 at 981.515 kb on + strand, within JDDGAC_05630 at 981.516 kb on - strand, within JDDGAC_05630
Per-strain Table
Position Strand Gene LocusTag Fraction GB_JK32 remove 979,111 + -0.7 979,111 + -1.5 979,111 + +1.5 979,112 - +0.4 979,112 - -1.5 979,334 - JDDGAC_05610 0.48 +0.5 979,492 - -0.6 979,909 + JDDGAC_05620 0.47 -1.0 979,916 - JDDGAC_05620 0.49 +2.3 979,916 - JDDGAC_05620 0.49 -0.5 980,124 + JDDGAC_05625 0.10 -1.8 980,446 - JDDGAC_05625 0.65 -1.7 980,457 + JDDGAC_05625 0.67 +0.1 980,512 - JDDGAC_05625 0.77 -0.4 980,616 + +0.9 980,619 + +2.2 980,772 - +1.9 980,903 + JDDGAC_05630 0.15 -0.4 980,903 + JDDGAC_05630 0.15 -2.1 980,931 + JDDGAC_05630 0.17 +0.5 980,931 + JDDGAC_05630 0.17 +1.1 980,964 + JDDGAC_05630 0.19 +0.9 980,964 + JDDGAC_05630 0.19 -0.1 980,967 - JDDGAC_05630 0.19 -0.5 981,072 + JDDGAC_05630 0.26 -1.7 981,272 + JDDGAC_05630 0.38 +2.0 981,378 - JDDGAC_05630 0.44 -1.6 981,513 + JDDGAC_05630 0.52 +2.4 981,514 - JDDGAC_05630 0.52 -1.8 981,514 - JDDGAC_05630 0.52 -0.4 981,514 - JDDGAC_05630 0.52 +0.5 981,515 + JDDGAC_05630 0.52 -1.5 981,516 - JDDGAC_05630 0.52 +1.9
Or see this region's nucleotide sequence