Strain Fitness in Escherichia coli ECRC98 around JDDGAC_04270

Experiment: GB_JK32

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntJDDGAC_04265 and ydbL are separated by 413 nucleotidesydbL and JDDGAC_04275 are separated by 7 nucleotidesJDDGAC_04275 and ynbE overlap by 4 nucleotides JDDGAC_04265: JDDGAC_04265 - surface-exposed virulence protein BigA, at 752,076 to 755,111 _04265 JDDGAC_04270: ydbL - DUF1318 domain-containing protein, at 755,525 to 755,848 ydbL JDDGAC_04275: JDDGAC_04275 - YnbE family lipoprotein, at 755,856 to 756,041 _04275 JDDGAC_04280: ynbE - YdbH family protein, at 756,038 to 758,677 ynbE Position (kb) 755 756Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 754.703 kb on + strand, within JDDGAC_04265at 754.761 kb on - strand, within JDDGAC_04265at 754.848 kb on + strandat 754.858 kb on - strandat 754.858 kb on - strandat 755.690 kb on + strand, within ydbLat 755.828 kb on + strandat 755.829 kb on - strandat 755.943 kb on - strand, within JDDGAC_04275at 756.175 kb on - strandat 756.266 kb on - strandat 756.332 kb on - strand, within ynbEat 756.441 kb on - strand, within ynbEat 756.473 kb on - strand, within ynbEat 756.560 kb on - strand, within ynbEat 756.564 kb on - strand, within ynbEat 756.564 kb on - strand, within ynbEat 756.671 kb on - strand, within ynbEat 756.716 kb on - strand, within ynbEat 756.797 kb on - strand, within ynbE

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction GB_JK32
remove
754,703 + JDDGAC_04265 0.87 +1.1
754,761 - JDDGAC_04265 0.88 +0.2
754,848 + -0.3
754,858 - +0.0
754,858 - -0.9
755,690 + ydbL JDDGAC_04270 0.51 -3.0
755,828 + -1.3
755,829 - -0.7
755,943 - JDDGAC_04275 0.47 -0.6
756,175 - +0.3
756,266 - +0.8
756,332 - ynbE JDDGAC_04280 0.11 -0.3
756,441 - ynbE JDDGAC_04280 0.15 +2.2
756,473 - ynbE JDDGAC_04280 0.16 +0.4
756,560 - ynbE JDDGAC_04280 0.20 +2.4
756,564 - ynbE JDDGAC_04280 0.20 +0.9
756,564 - ynbE JDDGAC_04280 0.20 -0.9
756,671 - ynbE JDDGAC_04280 0.24 +2.2
756,716 - ynbE JDDGAC_04280 0.26 -2.1
756,797 - ynbE JDDGAC_04280 0.29 +0.2

Or see this region's nucleotide sequence