Experiment: GB_JK32
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt adhP and yddM are separated by 145 nucleotides yddM and fdnI are separated by 227 nucleotides fdnI and fdnH overlap by 8 nucleotides fdnH and fdnG are separated by 12 nucleotides
JDDGAC_03855: adhP - alcohol dehydrogenase AdhP, at 664,116 to 665,126
adhP
JDDGAC_03860: yddM - HigA family addiction module antitoxin, at 665,272 to 665,556
yddM
JDDGAC_03865: fdnI - formate dehydrogenase-N subunit gamma, at 665,784 to 666,437
fdnI
JDDGAC_03870: fdnH - formate dehydrogenase N subunit beta, at 666,430 to 667,314
fdnH
JDDGAC_03875: fdnG - formate dehydrogenase-N subunit alpha, at 667,327 to 670,374
fdnG
Position (kb) 665
666
667 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 664.826 kb on - strand, within adhP at 664.984 kb on + strand, within adhP at 664.984 kb on + strand, within adhP at 665.191 kb on + strand at 665.331 kb on + strand, within yddM at 665.332 kb on - strand, within yddM at 665.717 kb on + strand at 665.718 kb on - strand at 665.727 kb on - strand at 665.727 kb on - strand at 665.927 kb on - strand, within fdnI at 665.927 kb on - strand, within fdnI at 665.927 kb on - strand, within fdnI at 665.927 kb on - strand, within fdnI at 665.927 kb on - strand, within fdnI at 665.927 kb on - strand, within fdnI at 665.927 kb on - strand, within fdnI at 665.930 kb on + strand, within fdnI at 665.931 kb on - strand, within fdnI at 665.931 kb on - strand, within fdnI at 666.113 kb on - strand, within fdnI at 666.135 kb on - strand, within fdnI at 666.432 kb on - strand at 666.432 kb on - strand at 666.432 kb on - strand at 666.639 kb on - strand, within fdnH at 666.639 kb on - strand, within fdnH at 666.642 kb on + strand, within fdnH at 666.674 kb on + strand, within fdnH at 666.675 kb on - strand, within fdnH at 666.840 kb on + strand, within fdnH at 666.876 kb on + strand, within fdnH at 666.954 kb on - strand, within fdnH at 667.118 kb on + strand, within fdnH at 667.273 kb on - strand at 667.348 kb on + strand at 667.360 kb on - strand at 667.360 kb on - strand at 667.414 kb on + strand at 667.414 kb on + strand at 667.415 kb on - strand at 667.415 kb on - strand at 667.415 kb on - strand at 667.415 kb on - strand at 667.415 kb on - strand at 667.417 kb on - strand at 667.419 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction GB_JK32 remove 664,826 - adhP JDDGAC_03855 0.70 +1.2 664,984 + adhP JDDGAC_03855 0.86 -0.6 664,984 + adhP JDDGAC_03855 0.86 +1.6 665,191 + +0.9 665,331 + yddM JDDGAC_03860 0.21 +1.8 665,332 - yddM JDDGAC_03860 0.21 +0.5 665,717 + -1.1 665,718 - +0.2 665,727 - +2.6 665,727 - -0.2 665,927 - fdnI JDDGAC_03865 0.22 -1.3 665,927 - fdnI JDDGAC_03865 0.22 -0.2 665,927 - fdnI JDDGAC_03865 0.22 +0.5 665,927 - fdnI JDDGAC_03865 0.22 +1.6 665,927 - fdnI JDDGAC_03865 0.22 +0.9 665,927 - fdnI JDDGAC_03865 0.22 -0.6 665,927 - fdnI JDDGAC_03865 0.22 -1.1 665,930 + fdnI JDDGAC_03865 0.22 -1.8 665,931 - fdnI JDDGAC_03865 0.22 -3.2 665,931 - fdnI JDDGAC_03865 0.22 -0.5 666,113 - fdnI JDDGAC_03865 0.50 -0.5 666,135 - fdnI JDDGAC_03865 0.54 -1.0 666,432 - -1.1 666,432 - +1.5 666,432 - +2.9 666,639 - fdnH JDDGAC_03870 0.24 +0.9 666,639 - fdnH JDDGAC_03870 0.24 +0.7 666,642 + fdnH JDDGAC_03870 0.24 +0.5 666,674 + fdnH JDDGAC_03870 0.28 +3.2 666,675 - fdnH JDDGAC_03870 0.28 +1.2 666,840 + fdnH JDDGAC_03870 0.46 +2.5 666,876 + fdnH JDDGAC_03870 0.50 -2.1 666,954 - fdnH JDDGAC_03870 0.59 -1.7 667,118 + fdnH JDDGAC_03870 0.78 -0.2 667,273 - +1.1 667,348 + -0.6 667,360 - -1.9 667,360 - -1.8 667,414 + -1.1 667,414 + -1.9 667,415 - -0.1 667,415 - +1.0 667,415 - +1.1 667,415 - +1.9 667,415 - -0.1 667,417 - +1.2 667,419 - +0.2
Or see this region's nucleotide sequence