Experiment: GB_JK32
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_03155 and JDDGAC_03160 are separated by 192 nucleotides JDDGAC_03160 and JDDGAC_03165 are separated by 26 nucleotides JDDGAC_03165 and JDDGAC_03170 overlap by 17 nucleotides JDDGAC_03170 and eCs1768 overlap by 29 nucleotides
JDDGAC_03155: JDDGAC_03155 - DUF1391 domain-containing protein, at 538,063 to 538,215
_03155
JDDGAC_03160: JDDGAC_03160 - transcriptional regulator, at 538,408 to 538,866
_03160
JDDGAC_03165: JDDGAC_03165 - transcriptional regulator, at 538,893 to 539,120
_03165
JDDGAC_03170: JDDGAC_03170 - Putative bacterial toxin ydaT, at 539,104 to 539,655
_03170
JDDGAC_03175: eCs1768 - DNA-binding protein, at 539,627 to 540,667
eCs1768
Position (kb) 539
540 Strain fitness (log2 ratio) -1
0
1
2 at 538.130 kb on + strand, within JDDGAC_03155 at 538.820 kb on - strand, within JDDGAC_03160 at 538.820 kb on - strand, within JDDGAC_03160 at 538.820 kb on - strand, within JDDGAC_03160 at 538.820 kb on - strand, within JDDGAC_03160 at 538.899 kb on - strand at 539.046 kb on + strand, within JDDGAC_03165 at 539.071 kb on - strand, within JDDGAC_03165 at 539.189 kb on + strand, within JDDGAC_03170 at 539.418 kb on + strand, within JDDGAC_03170 at 539.590 kb on + strand, within JDDGAC_03170 at 539.609 kb on + strand at 539.609 kb on + strand at 540.127 kb on + strand, within eCs1768
Per-strain Table
Position Strand Gene LocusTag Fraction GB_JK32 remove 538,130 + JDDGAC_03155 0.44 +0.1 538,820 - JDDGAC_03160 0.90 +0.8 538,820 - JDDGAC_03160 0.90 +2.1 538,820 - JDDGAC_03160 0.90 +0.6 538,820 - JDDGAC_03160 0.90 +1.2 538,899 - +1.5 539,046 + JDDGAC_03165 0.67 -0.6 539,071 - JDDGAC_03165 0.78 +1.6 539,189 + JDDGAC_03170 0.15 +0.4 539,418 + JDDGAC_03170 0.57 +0.3 539,590 + JDDGAC_03170 0.88 -1.2 539,609 + +1.6 539,609 + +0.8 540,127 + eCs1768 JDDGAC_03175 0.48 +0.3
Or see this region's nucleotide sequence