Experiment: GB_JK32
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_02455 and ydaS are separated by 97 nucleotides ydaS and JDDGAC_02465 overlap by 4 nucleotides JDDGAC_02465 and JDDGAC_02470 are separated by 22 nucleotides JDDGAC_02470 and dnaC are separated by 6 nucleotides dnaC and JDDGAC_02480 are separated by 126 nucleotides
JDDGAC_02455: JDDGAC_02455 - Cro/Cl family transcriptional regulator, at 441,660 to 442,031
_02455
JDDGAC_02460: ydaS - Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT, at 442,129 to 442,431
ydaS
JDDGAC_02465: JDDGAC_02465 - Rha family transcriptional regulator, at 442,428 to 442,853
_02465
JDDGAC_02470: JDDGAC_02470 - DNA-binding protein, at 442,876 to 443,838
_02470
JDDGAC_02475: dnaC - DNA replication protein DnaC, at 443,845 to 444,585
dnaC
JDDGAC_02480: JDDGAC_02480 - DUF1627 domain-containing protein, at 444,712 to 445,380
_02480
Position (kb) 442
443
444 Strain fitness (log2 ratio) -2
-1
0
1
2 at 442.128 kb on + strand at 442.210 kb on + strand, within ydaS at 442.211 kb on - strand, within ydaS at 442.211 kb on - strand, within ydaS at 442.242 kb on + strand, within ydaS at 442.243 kb on - strand, within ydaS at 442.243 kb on - strand, within ydaS at 442.292 kb on + strand, within ydaS at 442.293 kb on - strand, within ydaS at 442.329 kb on + strand, within ydaS at 442.330 kb on - strand, within ydaS at 442.376 kb on + strand, within ydaS at 442.398 kb on + strand, within ydaS at 442.398 kb on + strand, within ydaS at 442.723 kb on - strand, within JDDGAC_02465 at 442.875 kb on + strand at 442.875 kb on + strand at 443.142 kb on + strand, within JDDGAC_02470 at 443.188 kb on + strand, within JDDGAC_02470 at 443.352 kb on - strand, within JDDGAC_02470 at 444.070 kb on + strand, within dnaC at 444.071 kb on - strand, within dnaC at 444.507 kb on + strand, within dnaC at 444.579 kb on + strand at 444.580 kb on - strand at 444.703 kb on + strand at 444.807 kb on - strand, within JDDGAC_02480
Per-strain Table
Position Strand Gene LocusTag Fraction GB_JK32 remove 442,128 + -0.5 442,210 + ydaS JDDGAC_02460 0.27 -1.6 442,211 - ydaS JDDGAC_02460 0.27 +1.1 442,211 - ydaS JDDGAC_02460 0.27 +1.7 442,242 + ydaS JDDGAC_02460 0.37 -1.0 442,243 - ydaS JDDGAC_02460 0.38 -1.2 442,243 - ydaS JDDGAC_02460 0.38 +0.5 442,292 + ydaS JDDGAC_02460 0.54 +2.7 442,293 - ydaS JDDGAC_02460 0.54 -2.1 442,329 + ydaS JDDGAC_02460 0.66 +0.8 442,330 - ydaS JDDGAC_02460 0.66 +0.0 442,376 + ydaS JDDGAC_02460 0.82 +1.0 442,398 + ydaS JDDGAC_02460 0.89 -1.4 442,398 + ydaS JDDGAC_02460 0.89 -1.0 442,723 - JDDGAC_02465 0.69 +1.1 442,875 + +0.6 442,875 + +0.7 443,142 + JDDGAC_02470 0.28 -0.8 443,188 + JDDGAC_02470 0.32 +0.0 443,352 - JDDGAC_02470 0.49 -1.4 444,070 + dnaC JDDGAC_02475 0.30 -0.7 444,071 - dnaC JDDGAC_02475 0.30 +0.4 444,507 + dnaC JDDGAC_02475 0.89 +1.0 444,579 + +1.0 444,580 - -2.2 444,703 + +0.1 444,807 - JDDGAC_02480 0.14 +0.4
Or see this region's nucleotide sequence