Experiment: GB_JK32
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ydhK and ydhJ overlap by 1 nucleotides ydhJ and ydhI are separated by 2 nucleotides ydhI and slyA are separated by 200 nucleotides slyA and slyB are separated by 46 nucleotides
JDDGAC_02050: ydhK - Uncharacterized transporter YdhK, at 366,694 to 368,706
ydhK
JDDGAC_02055: ydhJ - Uncharacterized protein YdhJ, at 368,706 to 369,563
ydhJ
JDDGAC_02060: ydhI - Uncharacterized protein YdhI, at 369,566 to 369,802
ydhI
JDDGAC_02065: slyA - transcriptional regulator SlyA, at 370,003 to 370,437
slyA
JDDGAC_02070: slyB - outer membrane lipoprotein SlyB, at 370,484 to 370,951
slyB
Position (kb) 369
370 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 368.588 kb on + strand at 368.822 kb on + strand, within ydhJ at 368.841 kb on - strand, within ydhJ at 368.872 kb on + strand, within ydhJ at 368.924 kb on + strand, within ydhJ at 368.927 kb on - strand, within ydhJ at 369.258 kb on - strand, within ydhJ at 369.401 kb on + strand, within ydhJ at 369.401 kb on + strand, within ydhJ at 369.401 kb on + strand, within ydhJ at 369.478 kb on + strand at 369.481 kb on + strand at 369.567 kb on + strand at 369.767 kb on + strand, within ydhI at 369.768 kb on - strand, within ydhI at 369.829 kb on + strand at 369.856 kb on + strand at 369.891 kb on + strand at 369.936 kb on + strand at 369.952 kb on + strand at 369.990 kb on + strand at 370.016 kb on + strand at 370.108 kb on - strand, within slyA at 370.321 kb on - strand, within slyA at 370.482 kb on - strand at 370.527 kb on - strand at 370.724 kb on - strand, within slyB
Per-strain Table
Position Strand Gene LocusTag Fraction GB_JK32 remove 368,588 + -1.6 368,822 + ydhJ JDDGAC_02055 0.14 +3.3 368,841 - ydhJ JDDGAC_02055 0.16 -0.5 368,872 + ydhJ JDDGAC_02055 0.19 +0.7 368,924 + ydhJ JDDGAC_02055 0.25 -0.5 368,927 - ydhJ JDDGAC_02055 0.26 +1.5 369,258 - ydhJ JDDGAC_02055 0.64 +1.8 369,401 + ydhJ JDDGAC_02055 0.81 -1.0 369,401 + ydhJ JDDGAC_02055 0.81 -0.2 369,401 + ydhJ JDDGAC_02055 0.81 -1.8 369,478 + +5.8 369,481 + +3.3 369,567 + +0.3 369,767 + ydhI JDDGAC_02060 0.85 -0.6 369,768 - ydhI JDDGAC_02060 0.85 -1.1 369,829 + -1.3 369,856 + +3.6 369,891 + -1.6 369,936 + -0.0 369,952 + +1.9 369,990 + +0.4 370,016 + +0.3 370,108 - slyA JDDGAC_02065 0.24 -1.6 370,321 - slyA JDDGAC_02065 0.73 +0.4 370,482 - -2.2 370,527 - +0.0 370,724 - slyB JDDGAC_02070 0.51 +0.3
Or see this region's nucleotide sequence