Experiment: GB_JK32
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_01360 and tnp-IS629 overlap by 1 nucleotides tnp-IS629 and ydjE are separated by 152 nucleotides ydjE and pncA are separated by 92 nucleotides pncA and ansA are separated by 10 nucleotides
JDDGAC_01360: JDDGAC_01360 - IS3 family transposase, at 233,789 to 234,676
_01360
JDDGAC_01365: tnp-IS629 - IS3 family IS629 transposase, at 234,676 to 235,002
tnp-IS629
JDDGAC_01370: ydjE - Inner membrane metabolite transport protein YdjE, at 235,155 to 236,315
ydjE
JDDGAC_01375: pncA - bifunctional nicotinamidase/pyrazinamidase, at 236,408 to 237,049
pncA
JDDGAC_01380: ansA - asparaginase, at 237,060 to 238,076
ansA
Position (kb) 235
236
237 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 235.143 kb on - strand at 235.204 kb on - strand at 235.283 kb on + strand, within ydjE at 235.283 kb on + strand, within ydjE at 235.283 kb on + strand, within ydjE at 235.288 kb on - strand, within ydjE at 235.296 kb on - strand, within ydjE at 235.340 kb on + strand, within ydjE at 235.538 kb on + strand, within ydjE at 235.547 kb on + strand, within ydjE at 235.894 kb on + strand, within ydjE at 235.952 kb on - strand, within ydjE at 235.979 kb on + strand, within ydjE at 236.052 kb on + strand, within ydjE at 236.442 kb on + strand at 236.443 kb on - strand at 236.444 kb on + strand at 236.445 kb on - strand at 236.445 kb on - strand at 236.445 kb on - strand at 236.542 kb on + strand, within pncA at 236.549 kb on + strand, within pncA at 236.549 kb on + strand, within pncA at 236.550 kb on - strand, within pncA at 236.593 kb on + strand, within pncA at 236.691 kb on + strand, within pncA at 236.720 kb on - strand, within pncA at 236.841 kb on + strand, within pncA at 236.841 kb on + strand, within pncA at 236.850 kb on - strand, within pncA at 236.966 kb on - strand, within pncA at 237.030 kb on - strand at 237.172 kb on - strand, within ansA at 237.179 kb on + strand, within ansA at 237.257 kb on + strand, within ansA at 237.257 kb on + strand, within ansA at 237.257 kb on + strand, within ansA at 237.258 kb on - strand, within ansA at 237.258 kb on - strand, within ansA at 237.258 kb on - strand, within ansA at 237.307 kb on - strand, within ansA
Per-strain Table
Position Strand Gene LocusTag Fraction GB_JK32 remove 235,143 - +1.1 235,204 - -2.0 235,283 + ydjE JDDGAC_01370 0.11 -0.2 235,283 + ydjE JDDGAC_01370 0.11 -1.3 235,283 + ydjE JDDGAC_01370 0.11 -1.6 235,288 - ydjE JDDGAC_01370 0.11 -1.0 235,296 - ydjE JDDGAC_01370 0.12 +0.3 235,340 + ydjE JDDGAC_01370 0.16 -2.1 235,538 + ydjE JDDGAC_01370 0.33 -0.5 235,547 + ydjE JDDGAC_01370 0.34 -1.4 235,894 + ydjE JDDGAC_01370 0.64 -0.9 235,952 - ydjE JDDGAC_01370 0.69 -1.3 235,979 + ydjE JDDGAC_01370 0.71 -0.9 236,052 + ydjE JDDGAC_01370 0.77 -0.0 236,442 + +0.8 236,443 - +0.9 236,444 + -0.2 236,445 - +0.9 236,445 - +0.6 236,445 - +1.2 236,542 + pncA JDDGAC_01375 0.21 -1.7 236,549 + pncA JDDGAC_01375 0.22 +1.0 236,549 + pncA JDDGAC_01375 0.22 +0.9 236,550 - pncA JDDGAC_01375 0.22 +2.4 236,593 + pncA JDDGAC_01375 0.29 -0.9 236,691 + pncA JDDGAC_01375 0.44 +1.4 236,720 - pncA JDDGAC_01375 0.49 +1.1 236,841 + pncA JDDGAC_01375 0.67 -0.9 236,841 + pncA JDDGAC_01375 0.67 +1.6 236,850 - pncA JDDGAC_01375 0.69 +2.1 236,966 - pncA JDDGAC_01375 0.87 -2.5 237,030 - -0.1 237,172 - ansA JDDGAC_01380 0.11 +1.9 237,179 + ansA JDDGAC_01380 0.12 +5.1 237,257 + ansA JDDGAC_01380 0.19 +2.1 237,257 + ansA JDDGAC_01380 0.19 +0.8 237,257 + ansA JDDGAC_01380 0.19 -0.7 237,258 - ansA JDDGAC_01380 0.19 +0.9 237,258 - ansA JDDGAC_01380 0.19 -1.0 237,258 - ansA JDDGAC_01380 0.19 -0.2 237,307 - ansA JDDGAC_01380 0.24 +0.7
Or see this region's nucleotide sequence