Strain Fitness in Escherichia coli ECRC98 around JDDGAC_00855

Experiment: GB_JK32

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntruvC and JDDGAC_00845 are separated by 1 nucleotidesJDDGAC_00845 and yobI are separated by 70 nucleotidesyobI and ruvA are separated by 138 nucleotidesruvA and ruvB are separated by 8 nucleotides JDDGAC_00840: ruvC - crossover junction endodeoxyribonuclease RuvC, at 139,933 to 140,454 ruvC JDDGAC_00845: JDDGAC_00845 - Protein, at 140,456 to 141,058 _00845 JDDGAC_00850: yobI - Uncharacterized protein YobI, at 141,129 to 141,194 yobI JDDGAC_00855: ruvA - Holliday junction branch migration protein RuvA, at 141,333 to 141,944 ruvA JDDGAC_00860: ruvB - Holliday junction branch migration DNA helicase RuvB, at 141,953 to 142,963 ruvB Position (kb) 141 142Strain fitness (log2 ratio) -1 0 1 2 3at 140.452 kb on + strandat 141.003 kb on - strandat 141.190 kb on + strandat 141.275 kb on + strandat 141.295 kb on + strandat 142.043 kb on + strandat 142.863 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction GB_JK32
remove
140,452 + +0.2
141,003 - +0.0
141,190 + -0.7
141,275 + -0.3
141,295 + -0.4
142,043 + +3.6
142,863 - +0.1

Or see this region's nucleotide sequence