Strain Fitness in Escherichia coli ECRC98 around JDDGAC_00145

Experiment: GB_JK32

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmsrP and hiuH are separated by 107 nucleotideshiuH and hprR are separated by 21 nucleotideshprR and hprS overlap by 1 nucleotides JDDGAC_00140: msrP - protein-methionine-sulfoxide reductase catalytic subunit MsrP, at 24,211 to 25,215 msrP JDDGAC_00145: hiuH - hydroxyisourate hydrolase, at 25,323 to 25,736 hiuH JDDGAC_00150: hprR - response regulator transcription factor HprR, at 25,758 to 26,540 hprR JDDGAC_00155: hprS - two-component system sensor histidine kinase HprS, at 26,540 to 27,898 hprS Position (kb) 25 26Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 24.372 kb on + strand, within msrPat 24.483 kb on - strand, within msrPat 24.551 kb on - strand, within msrPat 24.551 kb on - strand, within msrPat 24.551 kb on - strand, within msrPat 24.551 kb on - strand, within msrPat 24.605 kb on + strand, within msrPat 24.791 kb on + strand, within msrPat 24.792 kb on - strand, within msrPat 24.792 kb on - strand, within msrPat 24.795 kb on + strand, within msrPat 24.795 kb on + strand, within msrPat 24.824 kb on - strand, within msrPat 24.955 kb on - strand, within msrPat 24.970 kb on - strand, within msrPat 25.074 kb on + strand, within msrPat 25.139 kb on - strandat 25.310 kb on - strandat 25.539 kb on - strand, within hiuHat 25.741 kb on - strandat 25.809 kb on + strandat 25.845 kb on + strand, within hprRat 25.846 kb on - strand, within hprRat 26.001 kb on + strand, within hprRat 26.021 kb on + strand, within hprRat 26.099 kb on + strand, within hprRat 26.158 kb on - strand, within hprRat 26.414 kb on + strand, within hprR

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Per-strain Table

Position Strand Gene LocusTag Fraction GB_JK32
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24,372 + msrP JDDGAC_00140 0.16 -1.1
24,483 - msrP JDDGAC_00140 0.27 +2.6
24,551 - msrP JDDGAC_00140 0.34 +0.7
24,551 - msrP JDDGAC_00140 0.34 -0.0
24,551 - msrP JDDGAC_00140 0.34 +2.4
24,551 - msrP JDDGAC_00140 0.34 +0.0
24,605 + msrP JDDGAC_00140 0.39 +0.7
24,791 + msrP JDDGAC_00140 0.58 +1.2
24,792 - msrP JDDGAC_00140 0.58 +2.1
24,792 - msrP JDDGAC_00140 0.58 +0.4
24,795 + msrP JDDGAC_00140 0.58 -0.8
24,795 + msrP JDDGAC_00140 0.58 +0.5
24,824 - msrP JDDGAC_00140 0.61 -1.8
24,955 - msrP JDDGAC_00140 0.74 +1.0
24,970 - msrP JDDGAC_00140 0.76 +0.4
25,074 + msrP JDDGAC_00140 0.86 +0.0
25,139 - -0.1
25,310 - -0.3
25,539 - hiuH JDDGAC_00145 0.52 -0.9
25,741 - +0.6
25,809 + -0.1
25,845 + hprR JDDGAC_00150 0.11 +0.1
25,846 - hprR JDDGAC_00150 0.11 -0.1
26,001 + hprR JDDGAC_00150 0.31 +0.2
26,021 + hprR JDDGAC_00150 0.34 -2.8
26,099 + hprR JDDGAC_00150 0.44 -2.1
26,158 - hprR JDDGAC_00150 0.51 +0.1
26,414 + hprR JDDGAC_00150 0.84 -0.7

Or see this region's nucleotide sequence