Experiment: GB_Bas14
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt repA and JDDGAC_29930 are separated by 407 nucleotides JDDGAC_29930 and JDDGAC_29935 overlap by 4 nucleotides JDDGAC_29935 and JDDGAC_29940 overlap by 4 nucleotides
JDDGAC_29925: repA - RepFIB replication protein A, at 11,580 to 12,557
repA
JDDGAC_29930: JDDGAC_29930 - W0044, at 12,965 to 13,165
_29930
JDDGAC_29935: JDDGAC_29935 - hypothetical protein, at 13,162 to 13,782
_29935
JDDGAC_29940: JDDGAC_29940 - Plasmid replication region DNA-binding N-term, at 13,779 to 14,378
_29940
Position (kb) 12
13
14 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 11.975 kb on + strand, within repA at 12.073 kb on + strand, within repA at 12.074 kb on - strand, within repA at 12.074 kb on - strand, within repA at 12.076 kb on + strand, within repA at 12.087 kb on + strand, within repA at 12.087 kb on + strand, within repA at 12.104 kb on - strand, within repA at 12.217 kb on - strand, within repA at 12.219 kb on - strand, within repA at 12.270 kb on + strand, within repA at 12.429 kb on - strand, within repA at 12.455 kb on + strand, within repA at 12.513 kb on - strand at 12.551 kb on + strand at 12.552 kb on - strand at 12.552 kb on - strand at 12.631 kb on - strand at 12.631 kb on - strand at 12.661 kb on - strand at 12.689 kb on + strand at 12.690 kb on - strand at 12.693 kb on + strand at 12.694 kb on - strand at 12.738 kb on + strand at 12.739 kb on - strand at 12.739 kb on - strand at 12.739 kb on - strand at 12.739 kb on - strand at 12.783 kb on + strand at 12.790 kb on + strand at 12.812 kb on - strand at 12.931 kb on + strand at 12.954 kb on + strand at 12.954 kb on + strand at 12.955 kb on - strand at 12.955 kb on - strand at 12.955 kb on - strand at 12.967 kb on - strand at 12.968 kb on + strand at 12.968 kb on + strand at 12.968 kb on + strand at 12.969 kb on - strand at 12.969 kb on - strand at 12.992 kb on - strand, within JDDGAC_29930 at 13.070 kb on - strand, within JDDGAC_29930 at 13.070 kb on - strand, within JDDGAC_29930 at 13.070 kb on - strand, within JDDGAC_29930 at 13.070 kb on - strand, within JDDGAC_29930 at 13.149 kb on + strand at 13.149 kb on + strand at 13.155 kb on + strand at 13.155 kb on + strand at 13.155 kb on + strand at 13.155 kb on + strand at 13.156 kb on - strand at 13.240 kb on - strand, within JDDGAC_29935 at 13.242 kb on + strand, within JDDGAC_29935 at 13.242 kb on + strand, within JDDGAC_29935 at 13.243 kb on - strand, within JDDGAC_29935 at 13.265 kb on - strand, within JDDGAC_29935 at 13.265 kb on - strand, within JDDGAC_29935 at 13.337 kb on + strand, within JDDGAC_29935 at 13.338 kb on - strand, within JDDGAC_29935 at 13.402 kb on - strand, within JDDGAC_29935 at 13.402 kb on - strand, within JDDGAC_29935 at 13.405 kb on - strand, within JDDGAC_29935 at 13.458 kb on - strand, within JDDGAC_29935 at 13.499 kb on + strand, within JDDGAC_29935 at 13.500 kb on - strand, within JDDGAC_29935 at 13.516 kb on + strand, within JDDGAC_29935 at 13.517 kb on - strand, within JDDGAC_29935 at 13.619 kb on + strand, within JDDGAC_29935 at 13.620 kb on - strand, within JDDGAC_29935 at 13.622 kb on + strand, within JDDGAC_29935 at 13.622 kb on + strand, within JDDGAC_29935 at 13.632 kb on + strand, within JDDGAC_29935 at 13.632 kb on + strand, within JDDGAC_29935 at 13.758 kb on + strand at 13.758 kb on + strand at 13.758 kb on + strand at 13.759 kb on - strand at 13.759 kb on - strand at 13.759 kb on - strand at 13.762 kb on + strand at 13.762 kb on + strand at 13.762 kb on + strand at 13.763 kb on - strand at 13.763 kb on - strand at 13.765 kb on + strand at 13.956 kb on + strand, within JDDGAC_29940 at 13.966 kb on - strand, within JDDGAC_29940
Per-strain Table
Position Strand Gene LocusTag Fraction GB_Bas14 remove 11,975 + repA JDDGAC_29925 0.40 -0.1 12,073 + repA JDDGAC_29925 0.50 +1.9 12,074 - repA JDDGAC_29925 0.51 -1.0 12,074 - repA JDDGAC_29925 0.51 +0.6 12,076 + repA JDDGAC_29925 0.51 +0.2 12,087 + repA JDDGAC_29925 0.52 +0.8 12,087 + repA JDDGAC_29925 0.52 +0.3 12,104 - repA JDDGAC_29925 0.54 +0.6 12,217 - repA JDDGAC_29925 0.65 -0.8 12,219 - repA JDDGAC_29925 0.65 -0.6 12,270 + repA JDDGAC_29925 0.71 -1.5 12,429 - repA JDDGAC_29925 0.87 -0.6 12,455 + repA JDDGAC_29925 0.89 -0.6 12,513 - -3.7 12,551 + -0.0 12,552 - -0.9 12,552 - +0.2 12,631 - -0.7 12,631 - +0.5 12,661 - -2.6 12,689 + +0.4 12,690 - -0.9 12,693 + +0.1 12,694 - -1.7 12,738 + -1.3 12,739 - -0.7 12,739 - -0.4 12,739 - -0.9 12,739 - +0.8 12,783 + -0.2 12,790 + +0.8 12,812 - -0.6 12,931 + -1.1 12,954 + -1.7 12,954 + +0.9 12,955 - +1.2 12,955 - -0.2 12,955 - +1.4 12,967 - -0.0 12,968 + -1.8 12,968 + +0.6 12,968 + -0.5 12,969 - -0.4 12,969 - +1.5 12,992 - JDDGAC_29930 0.13 +1.1 13,070 - JDDGAC_29930 0.52 +1.8 13,070 - JDDGAC_29930 0.52 -1.1 13,070 - JDDGAC_29930 0.52 +0.9 13,070 - JDDGAC_29930 0.52 +0.5 13,149 + +1.0 13,149 + -1.0 13,155 + -1.2 13,155 + -1.8 13,155 + +1.9 13,155 + +1.1 13,156 - +1.2 13,240 - JDDGAC_29935 0.13 +0.8 13,242 + JDDGAC_29935 0.13 -1.8 13,242 + JDDGAC_29935 0.13 +1.1 13,243 - JDDGAC_29935 0.13 +0.4 13,265 - JDDGAC_29935 0.17 +0.9 13,265 - JDDGAC_29935 0.17 -0.2 13,337 + JDDGAC_29935 0.28 -3.3 13,338 - JDDGAC_29935 0.28 +2.4 13,402 - JDDGAC_29935 0.39 -1.1 13,402 - JDDGAC_29935 0.39 -0.7 13,405 - JDDGAC_29935 0.39 -2.3 13,458 - JDDGAC_29935 0.48 -0.1 13,499 + JDDGAC_29935 0.54 +1.7 13,500 - JDDGAC_29935 0.54 -1.6 13,516 + JDDGAC_29935 0.57 -1.4 13,517 - JDDGAC_29935 0.57 +0.6 13,619 + JDDGAC_29935 0.74 +0.4 13,620 - JDDGAC_29935 0.74 -0.3 13,622 + JDDGAC_29935 0.74 -0.8 13,622 + JDDGAC_29935 0.74 -1.9 13,632 + JDDGAC_29935 0.76 -0.2 13,632 + JDDGAC_29935 0.76 -0.0 13,758 + +0.1 13,758 + +0.1 13,758 + +0.8 13,759 - +1.2 13,759 - +1.4 13,759 - -0.7 13,762 + +0.1 13,762 + +1.2 13,762 + +0.3 13,763 - +3.4 13,763 - -1.9 13,765 + -0.4 13,956 + JDDGAC_29940 0.29 +0.7 13,966 - JDDGAC_29940 0.31 +0.4
Or see this region's nucleotide sequence