Experiment: GB_Bas14
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt arnA and arnC overlap by 1 nucleotides arnC and arnB are separated by 3 nucleotides
JDDGAC_26950: arnA - bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA, at 5,161,736 to 5,163,718
arnA
JDDGAC_26955: arnC - undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase, at 5,163,718 to 5,164,686
arnC
JDDGAC_26960: arnB - UDP-4-amino-4-deoxy-L-arabinose aminotransferase, at 5,164,690 to 5,165,847
arnB
Position (kb) 5163
5164
5165 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5162.860 kb on + strand, within arnA at 5162.860 kb on + strand, within arnA at 5162.860 kb on + strand, within arnA at 5162.861 kb on - strand, within arnA at 5162.861 kb on - strand, within arnA at 5162.861 kb on - strand, within arnA at 5162.861 kb on - strand, within arnA at 5162.861 kb on - strand, within arnA at 5162.863 kb on + strand, within arnA at 5162.863 kb on + strand, within arnA at 5162.864 kb on - strand, within arnA at 5162.864 kb on - strand, within arnA at 5163.018 kb on + strand, within arnA at 5163.019 kb on - strand, within arnA at 5163.019 kb on - strand, within arnA at 5163.019 kb on - strand, within arnA at 5163.019 kb on - strand, within arnA at 5163.019 kb on - strand, within arnA at 5163.056 kb on + strand, within arnA at 5163.056 kb on + strand, within arnA at 5163.057 kb on - strand, within arnA at 5163.167 kb on - strand, within arnA at 5163.170 kb on - strand, within arnA at 5163.241 kb on + strand, within arnA at 5163.242 kb on - strand, within arnA at 5163.242 kb on - strand, within arnA at 5163.244 kb on + strand, within arnA at 5163.244 kb on + strand, within arnA at 5163.472 kb on - strand, within arnA at 5163.594 kb on + strand at 5163.595 kb on - strand at 5163.595 kb on - strand at 5163.697 kb on - strand at 5163.719 kb on + strand at 5163.868 kb on + strand, within arnC at 5163.869 kb on - strand, within arnC at 5163.874 kb on - strand, within arnC at 5163.984 kb on + strand, within arnC at 5164.044 kb on + strand, within arnC at 5164.045 kb on - strand, within arnC at 5164.204 kb on - strand, within arnC at 5164.211 kb on + strand, within arnC at 5164.245 kb on + strand, within arnC at 5164.245 kb on + strand, within arnC at 5164.306 kb on + strand, within arnC at 5164.398 kb on + strand, within arnC at 5164.402 kb on + strand, within arnC at 5164.402 kb on + strand, within arnC at 5164.402 kb on + strand, within arnC at 5164.403 kb on - strand, within arnC at 5164.477 kb on + strand, within arnC at 5164.478 kb on - strand, within arnC at 5164.478 kb on - strand, within arnC at 5164.483 kb on - strand, within arnC at 5164.516 kb on + strand, within arnC at 5164.516 kb on + strand, within arnC at 5164.519 kb on - strand, within arnC at 5164.566 kb on - strand, within arnC at 5164.566 kb on - strand, within arnC at 5164.610 kb on - strand at 5164.618 kb on + strand at 5164.636 kb on - strand at 5164.636 kb on - strand at 5164.692 kb on - strand at 5164.835 kb on + strand, within arnB at 5164.878 kb on + strand, within arnB at 5164.879 kb on - strand, within arnB at 5164.879 kb on - strand, within arnB at 5164.879 kb on - strand, within arnB at 5164.920 kb on + strand, within arnB at 5164.947 kb on + strand, within arnB at 5164.994 kb on - strand, within arnB at 5164.994 kb on - strand, within arnB at 5165.123 kb on + strand, within arnB at 5165.124 kb on - strand, within arnB at 5165.184 kb on - strand, within arnB at 5165.221 kb on + strand, within arnB at 5165.221 kb on + strand, within arnB at 5165.345 kb on + strand, within arnB at 5165.346 kb on - strand, within arnB at 5165.346 kb on - strand, within arnB at 5165.346 kb on - strand, within arnB at 5165.349 kb on + strand, within arnB at 5165.349 kb on + strand, within arnB at 5165.349 kb on + strand, within arnB at 5165.349 kb on + strand, within arnB at 5165.350 kb on - strand, within arnB at 5165.350 kb on - strand, within arnB at 5165.350 kb on - strand, within arnB at 5165.350 kb on - strand, within arnB at 5165.421 kb on + strand, within arnB at 5165.422 kb on - strand, within arnB at 5165.636 kb on - strand, within arnB at 5165.644 kb on - strand, within arnB
Per-strain Table
Position Strand Gene LocusTag Fraction GB_Bas14 remove 5,162,860 + arnA JDDGAC_26950 0.57 +0.3 5,162,860 + arnA JDDGAC_26950 0.57 -0.5 5,162,860 + arnA JDDGAC_26950 0.57 +0.9 5,162,861 - arnA JDDGAC_26950 0.57 +0.8 5,162,861 - arnA JDDGAC_26950 0.57 +0.7 5,162,861 - arnA JDDGAC_26950 0.57 -0.3 5,162,861 - arnA JDDGAC_26950 0.57 -0.2 5,162,861 - arnA JDDGAC_26950 0.57 +0.3 5,162,863 + arnA JDDGAC_26950 0.57 +1.2 5,162,863 + arnA JDDGAC_26950 0.57 -0.1 5,162,864 - arnA JDDGAC_26950 0.57 +0.2 5,162,864 - arnA JDDGAC_26950 0.57 -0.3 5,163,018 + arnA JDDGAC_26950 0.65 -0.5 5,163,019 - arnA JDDGAC_26950 0.65 -2.1 5,163,019 - arnA JDDGAC_26950 0.65 -1.5 5,163,019 - arnA JDDGAC_26950 0.65 -2.3 5,163,019 - arnA JDDGAC_26950 0.65 +0.1 5,163,019 - arnA JDDGAC_26950 0.65 -0.2 5,163,056 + arnA JDDGAC_26950 0.67 -1.2 5,163,056 + arnA JDDGAC_26950 0.67 +0.2 5,163,057 - arnA JDDGAC_26950 0.67 +1.0 5,163,167 - arnA JDDGAC_26950 0.72 -0.1 5,163,170 - arnA JDDGAC_26950 0.72 -0.8 5,163,241 + arnA JDDGAC_26950 0.76 +0.2 5,163,242 - arnA JDDGAC_26950 0.76 +0.5 5,163,242 - arnA JDDGAC_26950 0.76 -1.7 5,163,244 + arnA JDDGAC_26950 0.76 -0.0 5,163,244 + arnA JDDGAC_26950 0.76 +0.9 5,163,472 - arnA JDDGAC_26950 0.88 -1.1 5,163,594 + +0.0 5,163,595 - +1.8 5,163,595 - +0.5 5,163,697 - +1.0 5,163,719 + +0.2 5,163,868 + arnC JDDGAC_26955 0.15 -0.4 5,163,869 - arnC JDDGAC_26955 0.16 +1.1 5,163,874 - arnC JDDGAC_26955 0.16 -1.3 5,163,984 + arnC JDDGAC_26955 0.27 +0.2 5,164,044 + arnC JDDGAC_26955 0.34 +0.7 5,164,045 - arnC JDDGAC_26955 0.34 +1.8 5,164,204 - arnC JDDGAC_26955 0.50 +1.7 5,164,211 + arnC JDDGAC_26955 0.51 +0.4 5,164,245 + arnC JDDGAC_26955 0.54 +2.0 5,164,245 + arnC JDDGAC_26955 0.54 +3.3 5,164,306 + arnC JDDGAC_26955 0.61 +0.8 5,164,398 + arnC JDDGAC_26955 0.70 -1.1 5,164,402 + arnC JDDGAC_26955 0.71 -0.1 5,164,402 + arnC JDDGAC_26955 0.71 +1.3 5,164,402 + arnC JDDGAC_26955 0.71 +0.2 5,164,403 - arnC JDDGAC_26955 0.71 +0.2 5,164,477 + arnC JDDGAC_26955 0.78 -0.4 5,164,478 - arnC JDDGAC_26955 0.78 -0.7 5,164,478 - arnC JDDGAC_26955 0.78 -0.0 5,164,483 - arnC JDDGAC_26955 0.79 -0.9 5,164,516 + arnC JDDGAC_26955 0.82 +1.5 5,164,516 + arnC JDDGAC_26955 0.82 -0.2 5,164,519 - arnC JDDGAC_26955 0.83 -0.1 5,164,566 - arnC JDDGAC_26955 0.88 +1.1 5,164,566 - arnC JDDGAC_26955 0.88 +0.5 5,164,610 - -0.2 5,164,618 + -1.0 5,164,636 - +0.6 5,164,636 - +0.5 5,164,692 - +0.3 5,164,835 + arnB JDDGAC_26960 0.13 +1.1 5,164,878 + arnB JDDGAC_26960 0.16 +1.0 5,164,879 - arnB JDDGAC_26960 0.16 -1.0 5,164,879 - arnB JDDGAC_26960 0.16 +1.7 5,164,879 - arnB JDDGAC_26960 0.16 -0.1 5,164,920 + arnB JDDGAC_26960 0.20 -1.7 5,164,947 + arnB JDDGAC_26960 0.22 +0.3 5,164,994 - arnB JDDGAC_26960 0.26 -0.6 5,164,994 - arnB JDDGAC_26960 0.26 +1.0 5,165,123 + arnB JDDGAC_26960 0.37 -1.6 5,165,124 - arnB JDDGAC_26960 0.37 -0.8 5,165,184 - arnB JDDGAC_26960 0.43 -0.3 5,165,221 + arnB JDDGAC_26960 0.46 -0.8 5,165,221 + arnB JDDGAC_26960 0.46 +0.9 5,165,345 + arnB JDDGAC_26960 0.57 -2.0 5,165,346 - arnB JDDGAC_26960 0.57 +0.2 5,165,346 - arnB JDDGAC_26960 0.57 +0.3 5,165,346 - arnB JDDGAC_26960 0.57 +1.8 5,165,349 + arnB JDDGAC_26960 0.57 -1.5 5,165,349 + arnB JDDGAC_26960 0.57 -2.0 5,165,349 + arnB JDDGAC_26960 0.57 +0.6 5,165,349 + arnB JDDGAC_26960 0.57 -0.0 5,165,350 - arnB JDDGAC_26960 0.57 +0.6 5,165,350 - arnB JDDGAC_26960 0.57 -0.1 5,165,350 - arnB JDDGAC_26960 0.57 -0.1 5,165,350 - arnB JDDGAC_26960 0.57 +0.5 5,165,421 + arnB JDDGAC_26960 0.63 +3.0 5,165,422 - arnB JDDGAC_26960 0.63 +0.1 5,165,636 - arnB JDDGAC_26960 0.82 -0.2 5,165,644 - arnB JDDGAC_26960 0.82 -1.2
Or see this region's nucleotide sequence