Strain Fitness in Escherichia coli ECRC98 around JDDGAC_11840

Experiment: GB_Bas14

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	GB_Bas14
2,167,981	+	ybaN	JDDGAC_11825	0.52	-3.3
2,167,982	-	ybaN	JDDGAC_11825	0.53	+0.7
2,167,982	-	ybaN	JDDGAC_11825	0.53	-1.0
2,167,982	-	ybaN	JDDGAC_11825	0.53	+1.3
2,167,982	-	ybaN	JDDGAC_11825	0.53	+1.1
2,167,982	-	ybaN	JDDGAC_11825	0.53	+0.5
2,167,986	-	ybaN	JDDGAC_11825	0.54	-0.4
2,167,986	-	ybaN	JDDGAC_11825	0.54	-2.5
2,167,986	-	ybaN	JDDGAC_11825	0.54	-2.1
2,167,986	-	ybaN	JDDGAC_11825	0.54	+1.2
2,167,986	-	ybaN	JDDGAC_11825	0.54	+0.6
2,168,087	-	ybaN	JDDGAC_11825	0.80	-0.5
2,168,096	-	ybaN	JDDGAC_11825	0.83	-1.7
2,168,143	+				-2.9
2,168,160	+				+0.3
2,168,160	+				+0.2
2,168,161	-				+0.7
2,168,179	-				-0.7
2,168,194	+				-1.7
2,168,200	-				-0.1
2,168,207	-				+1.8
2,168,318	+	priC	JDDGAC_11830	0.17	-2.0
2,168,318	+	priC	JDDGAC_11830	0.17	+2.4
2,168,366	+	priC	JDDGAC_11830	0.26	+0.2
2,168,367	-	priC	JDDGAC_11830	0.26	+1.2
2,168,484	+	priC	JDDGAC_11830	0.48	+1.8
2,168,484	+	priC	JDDGAC_11830	0.48	-3.9
2,168,485	-	priC	JDDGAC_11830	0.48	+0.4
2,168,487	-	priC	JDDGAC_11830	0.49	+0.4
2,168,594	+	priC	JDDGAC_11830	0.69	-0.3
2,168,595	-	priC	JDDGAC_11830	0.69	-0.2
2,168,617	-	priC	JDDGAC_11830	0.73	-0.9
2,168,684	-	priC	JDDGAC_11830	0.86	-3.1
2,168,684	-	priC	JDDGAC_11830	0.86	-0.7
2,168,770	+				-0.1
2,168,770	+				-0.6
2,168,770	+				-2.4
2,168,770	+				-1.0
2,168,771	-				-2.6
2,168,892	-	rsmS	JDDGAC_11835	0.73	+1.0
2,168,967	-				-0.0
2,168,967	-				-0.3
2,169,114	+				-1.5
2,169,118	-				+0.0
2,169,139	-				+1.4
2,169,144	+				-0.5
2,169,167	+				+0.6
2,169,168	-				+0.4
2,169,168	-				-0.1
2,169,280	-				-1.9
2,169,305	+				-1.5
2,169,339	+	mscK	JDDGAC_11840	0.11	+1.8
2,169,442	-	mscK	JDDGAC_11840	0.14	-1.6
2,169,450	+	mscK	JDDGAC_11840	0.14	+0.1
2,169,451	-	mscK	JDDGAC_11840	0.14	-0.6
2,169,455	-	mscK	JDDGAC_11840	0.14	-2.9
2,169,455	-	mscK	JDDGAC_11840	0.14	-1.0
2,169,471	+	mscK	JDDGAC_11840	0.15	-0.3
2,169,574	+	mscK	JDDGAC_11840	0.18	-0.9
2,169,575	-	mscK	JDDGAC_11840	0.18	+1.9
2,169,575	-	mscK	JDDGAC_11840	0.18	+0.3
2,169,581	-	mscK	JDDGAC_11840	0.18	+0.6
2,169,657	+	mscK	JDDGAC_11840	0.20	+3.3
2,169,657	+	mscK	JDDGAC_11840	0.20	-0.7
2,169,658	-	mscK	JDDGAC_11840	0.20	+0.8
2,169,665	+	mscK	JDDGAC_11840	0.21	-0.8
2,169,666	-	mscK	JDDGAC_11840	0.21	-1.1
2,169,666	-	mscK	JDDGAC_11840	0.21	-1.3
2,169,666	-	mscK	JDDGAC_11840	0.21	-0.9
2,169,669	+	mscK	JDDGAC_11840	0.21	+0.8
2,169,670	-	mscK	JDDGAC_11840	0.21	-1.5
2,169,678	+	mscK	JDDGAC_11840	0.21	+0.9
2,169,678	+	mscK	JDDGAC_11840	0.21	+0.6
2,169,678	+	mscK	JDDGAC_11840	0.21	-0.0
2,169,679	-	mscK	JDDGAC_11840	0.21	+0.5
2,169,679	-	mscK	JDDGAC_11840	0.21	+2.6
2,169,689	+	mscK	JDDGAC_11840	0.21	+1.2
2,169,709	-	mscK	JDDGAC_11840	0.22	-1.0
2,169,805	-	mscK	JDDGAC_11840	0.25	+0.4
2,169,854	+	mscK	JDDGAC_11840	0.26	-0.1
2,169,854	+	mscK	JDDGAC_11840	0.26	+0.8
2,169,854	+	mscK	JDDGAC_11840	0.26	+0.2
2,169,868	-	mscK	JDDGAC_11840	0.27	-0.4
2,169,868	-	mscK	JDDGAC_11840	0.27	+0.1
2,169,868	-	mscK	JDDGAC_11840	0.27	+0.9
2,169,957	+	mscK	JDDGAC_11840	0.29	-2.7
2,169,958	-	mscK	JDDGAC_11840	0.29	-0.6
2,169,958	-	mscK	JDDGAC_11840	0.29	+0.1
2,169,958	-	mscK	JDDGAC_11840	0.29	+0.8
2,170,112	-	mscK	JDDGAC_11840	0.34	+2.3
2,170,196	+	mscK	JDDGAC_11840	0.36	-0.9
2,170,196	+	mscK	JDDGAC_11840	0.36	+1.2
2,170,282	-	mscK	JDDGAC_11840	0.39	-0.4
2,170,282	-	mscK	JDDGAC_11840	0.39	+0.7
2,170,313	-	mscK	JDDGAC_11840	0.40	+0.0
2,170,582	+	mscK	JDDGAC_11840	0.48	+0.6
2,170,583	-	mscK	JDDGAC_11840	0.48	+2.4
2,170,749	-	mscK	JDDGAC_11840	0.53	-0.7
2,170,825	-	mscK	JDDGAC_11840	0.55	+0.1
2,170,855	-	mscK	JDDGAC_11840	0.56	+1.2
2,170,997	-	mscK	JDDGAC_11840	0.60	-0.9
2,171,296	-	mscK	JDDGAC_11840	0.69	-1.2
2,171,340	+	mscK	JDDGAC_11840	0.70	+0.5
2,171,340	+	mscK	JDDGAC_11840	0.70	-1.7
2,171,340	+	mscK	JDDGAC_11840	0.70	-0.2
2,171,341	-	mscK	JDDGAC_11840	0.70	+1.4
2,171,341	-	mscK	JDDGAC_11840	0.70	-1.9
2,171,344	-	mscK	JDDGAC_11840	0.70	-1.6
2,171,487	+	mscK	JDDGAC_11840	0.75	+0.8
2,171,625	-	mscK	JDDGAC_11840	0.79	-1.8
2,171,680	-	mscK	JDDGAC_11840	0.80	+0.7
2,171,819	+	mscK	JDDGAC_11840	0.85	-0.1
2,171,820	-	mscK	JDDGAC_11840	0.85	+2.6
2,171,820	-	mscK	JDDGAC_11840	0.85	+1.2
2,171,820	-	mscK	JDDGAC_11840	0.85	+2.3
2,171,875	-	mscK	JDDGAC_11840	0.86	-0.8
2,171,876	+	mscK	JDDGAC_11840	0.86	+0.6
2,171,877	-	mscK	JDDGAC_11840	0.86	-0.8
2,172,000	+				-1.5
2,172,000	+				+1.1
2,172,086	-				+0.2
2,172,117	+				-0.3
2,172,118	-				-0.3
2,172,118	-				-0.4
2,172,118	-				-2.0
2,172,172	-				+0.3
2,172,175	+				-0.1
2,172,260	-				+0.5
2,172,318	-				-0.3
2,172,320	+				+0.6
2,172,330	+				+1.0
2,172,330	+				-0.5
2,172,330	+				-1.8
2,172,331	-				+1.2
2,172,331	-				+1.7
2,172,331	-				-2.4
2,172,331	-				+0.4
2,172,507	+				-1.8
2,172,507	+				+0.6
2,172,508	-				+0.9
2,172,508	-				-0.4
2,172,617	-	acrR	JDDGAC_11845	0.24	+1.1
2,172,689	+	acrR	JDDGAC_11845	0.35	-1.5
2,172,689	+	acrR	JDDGAC_11845	0.35	-0.3
2,172,692	-	acrR	JDDGAC_11845	0.35	-0.4
2,172,718	+	acrR	JDDGAC_11845	0.39	+0.9
2,172,718	+	acrR	JDDGAC_11845	0.39	+0.9
2,172,719	-	acrR	JDDGAC_11845	0.39	-1.5
2,172,775	+	acrR	JDDGAC_11845	0.48	+0.6
2,172,776	-	acrR	JDDGAC_11845	0.48	+0.0
2,172,788	+	acrR	JDDGAC_11845	0.50	-0.8
2,172,833	+	acrR	JDDGAC_11845	0.57	+1.0
2,172,833	+	acrR	JDDGAC_11845	0.57	+0.9
2,172,834	-	acrR	JDDGAC_11845	0.57	+0.9
2,172,837	-	acrR	JDDGAC_11845	0.58	-1.5
2,172,882	+	acrR	JDDGAC_11845	0.65	+1.0
2,172,883	-	acrR	JDDGAC_11845	0.65	-0.5
2,172,893	+	acrR	JDDGAC_11845	0.66	-0.6
2,172,893	+	acrR	JDDGAC_11845	0.66	-3.1
2,172,917	+	acrR	JDDGAC_11845	0.70	-0.1
2,172,918	-	acrR	JDDGAC_11845	0.70	-2.6
2,173,025	+	acrR	JDDGAC_11845	0.87	-3.0
2,173,050	-				+1.0
2,173,111	+				-0.5
2,173,111	+				-1.9
2,173,125	+				-0.7
2,173,158	+				-0.4
2,173,158	+				-0.3
2,173,158	+				+2.0
2,173,158	+				-1.2
2,173,159	-				+0.5
2,173,159	-				-2.7
2,173,168	-				+0.7
2,173,181	+				+0.4
2,173,181	+				-1.7
2,173,182	-				-0.4
2,173,182	-				-2.3
2,173,205	-				+1.4
2,173,248	+				+1.0
2,173,248	+				-2.5
2,173,252	+				-0.4
2,173,253	-				+0.2
2,173,253	-				+2.2
2,173,274	-				+0.1
2,173,311	+				+0.4
2,173,311	+				+1.6