Strain Fitness in Escherichia coli ECRC98 around JDDGAC_20360

Experiment: GB_Bas36

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	GB_Bas36
3,899,654	-	livJ	JDDGAC_20350	0.52	-1.9
3,899,654	-	livJ	JDDGAC_20350	0.52	+1.7
3,899,675	-	livJ	JDDGAC_20350	0.54	-0.1
3,899,731	+	livJ	JDDGAC_20350	0.59	-0.7
3,899,818	+	livJ	JDDGAC_20350	0.66	-0.3
3,899,907	-	livJ	JDDGAC_20350	0.75	-0.0
3,899,907	-	livJ	JDDGAC_20350	0.75	-2.2
3,899,907	-	livJ	JDDGAC_20350	0.75	-3.4
3,899,907	-	livJ	JDDGAC_20350	0.75	-2.9
3,900,059	+	livJ	JDDGAC_20350	0.88	-3.8
3,900,059	+	livJ	JDDGAC_20350	0.88	-2.8
3,900,060	-	livJ	JDDGAC_20350	0.88	-2.1
3,900,060	-	livJ	JDDGAC_20350	0.88	+1.7
3,900,186	-				-0.3
3,900,192	+				-1.7
3,900,192	+				+1.0
3,900,193	-				+1.3
3,900,193	-				-0.7
3,900,197	-				-0.5
3,900,268	+				+0.1
3,900,269	-				+0.6
3,900,313	-				-2.4
3,900,313	-				+0.7
3,900,318	-				-1.5
3,900,375	-		JDDGAC_20355	0.14	+2.0
3,900,421	-		JDDGAC_20355	0.31	-0.2
3,900,421	-		JDDGAC_20355	0.31	-0.5
3,900,421	-		JDDGAC_20355	0.31	+0.2
3,900,442	-		JDDGAC_20355	0.39	-0.0
3,900,602	-				-1.3
3,900,604	+				-0.8
3,900,660	-				-0.7
3,900,748	+	rimI	JDDGAC_20360	0.26	+1.0
3,900,748	+	rimI	JDDGAC_20360	0.26	-1.8
3,900,748	+	rimI	JDDGAC_20360	0.26	-2.9
3,900,749	-	rimI	JDDGAC_20360	0.26	-1.0
3,900,749	-	rimI	JDDGAC_20360	0.26	-2.2
3,900,749	-	rimI	JDDGAC_20360	0.26	+0.2
3,900,749	-	rimI	JDDGAC_20360	0.26	-2.5
3,900,793	+	rimI	JDDGAC_20360	0.35	-1.1
3,900,793	+	rimI	JDDGAC_20360	0.35	-0.7
3,900,793	+	rimI	JDDGAC_20360	0.35	-1.0
3,900,794	-	rimI	JDDGAC_20360	0.35	-2.3
3,900,794	-	rimI	JDDGAC_20360	0.35	+0.7
3,900,794	-	rimI	JDDGAC_20360	0.35	-0.9
3,900,794	-	rimI	JDDGAC_20360	0.35	-2.5
3,900,794	-	rimI	JDDGAC_20360	0.35	+2.3
3,900,801	-	rimI	JDDGAC_20360	0.36	-1.9
3,900,801	-	rimI	JDDGAC_20360	0.36	+1.5
3,900,990	+	rimI	JDDGAC_20360	0.72	-0.9
3,900,990	+	rimI	JDDGAC_20360	0.72	-0.0
3,900,991	-	rimI	JDDGAC_20360	0.72	-2.3
3,900,991	-	rimI	JDDGAC_20360	0.72	+0.4
3,900,991	-	rimI	JDDGAC_20360	0.72	+0.7
3,901,056	+	rimI	JDDGAC_20360	0.84	-0.7
3,901,088	+				-0.1
3,901,122	+				-0.5
3,901,122	+				-0.4
3,901,184	+	panM	JDDGAC_20365	0.13	+4.2
3,901,184	+	panM	JDDGAC_20365	0.13	+0.3
3,901,279	+	panM	JDDGAC_20365	0.38	-0.8
3,901,280	-	panM	JDDGAC_20365	0.38	-0.3
3,901,399	+	panM	JDDGAC_20365	0.69	-1.4
3,901,399	+	panM	JDDGAC_20365	0.69	-3.7
3,901,530	+				-2.6
3,901,531	-				-1.4
3,901,531	-				+1.6
3,901,567	+				-1.0
3,901,626	+				-2.3
3,901,638	+				+0.3
3,901,639	-				-1.6
3,901,961	+				+1.2
3,901,961	+				+0.8
3,902,018	+				-0.5
3,902,100	-	livK	JDDGAC_20370	0.14	+0.8