Experiment: L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS20555 and ABI39_RS20560 overlap by 4 nucleotides ABI39_RS20560 and ABI39_RS20565 are separated by 11 nucleotides
ABI39_RS20555: ABI39_RS20555 - glycosyltransferase family 4 protein, at 5,069,248 to 5,070,399
_RS20555
ABI39_RS20560: ABI39_RS20560 - glycosyltransferase family 1 protein, at 5,070,396 to 5,071,529
_RS20560
ABI39_RS20565: ABI39_RS20565 - glycosyltransferase, at 5,071,541 to 5,072,689
_RS20565
Position (kb) 5070
5071
5072 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5069.469 kb on - strand, within ABI39_RS20555 at 5069.487 kb on + strand, within ABI39_RS20555 at 5069.487 kb on + strand, within ABI39_RS20555 at 5069.498 kb on - strand, within ABI39_RS20555 at 5069.630 kb on + strand, within ABI39_RS20555 at 5069.684 kb on - strand, within ABI39_RS20555 at 5070.019 kb on - strand, within ABI39_RS20555 at 5070.088 kb on + strand, within ABI39_RS20555 at 5070.219 kb on - strand, within ABI39_RS20555 at 5070.380 kb on + strand at 5070.499 kb on + strand at 5070.633 kb on + strand, within ABI39_RS20560 at 5070.667 kb on + strand, within ABI39_RS20560 at 5070.668 kb on - strand, within ABI39_RS20560 at 5070.668 kb on - strand, within ABI39_RS20560 at 5070.755 kb on + strand, within ABI39_RS20560 at 5070.759 kb on + strand, within ABI39_RS20560 at 5070.985 kb on + strand, within ABI39_RS20560 at 5070.986 kb on - strand, within ABI39_RS20560 at 5070.988 kb on + strand, within ABI39_RS20560 at 5071.050 kb on + strand, within ABI39_RS20560 at 5071.100 kb on + strand, within ABI39_RS20560 at 5071.100 kb on + strand, within ABI39_RS20560 at 5071.312 kb on - strand, within ABI39_RS20560 at 5071.328 kb on - strand, within ABI39_RS20560 at 5071.376 kb on + strand, within ABI39_RS20560 at 5071.376 kb on + strand, within ABI39_RS20560 at 5071.377 kb on - strand, within ABI39_RS20560 at 5071.434 kb on + strand at 5071.435 kb on - strand at 5071.650 kb on - strand at 5071.650 kb on - strand at 5071.728 kb on + strand, within ABI39_RS20565 at 5071.728 kb on + strand, within ABI39_RS20565 at 5071.797 kb on + strand, within ABI39_RS20565 at 5071.921 kb on - strand, within ABI39_RS20565 at 5071.921 kb on - strand, within ABI39_RS20565 at 5072.176 kb on + strand, within ABI39_RS20565 at 5072.251 kb on - strand, within ABI39_RS20565 at 5072.251 kb on - strand, within ABI39_RS20565 at 5072.251 kb on - strand, within ABI39_RS20565 at 5072.256 kb on + strand, within ABI39_RS20565 at 5072.257 kb on - strand, within ABI39_RS20565 at 5072.258 kb on + strand, within ABI39_RS20565 at 5072.259 kb on - strand, within ABI39_RS20565 at 5072.290 kb on - strand, within ABI39_RS20565 at 5072.354 kb on - strand, within ABI39_RS20565 at 5072.415 kb on + strand, within ABI39_RS20565
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen remove 5,069,469 - ABI39_RS20555 0.19 -0.7 5,069,487 + ABI39_RS20555 0.21 -0.5 5,069,487 + ABI39_RS20555 0.21 -0.4 5,069,498 - ABI39_RS20555 0.22 +0.0 5,069,630 + ABI39_RS20555 0.33 -0.4 5,069,684 - ABI39_RS20555 0.38 +0.0 5,070,019 - ABI39_RS20555 0.67 -0.5 5,070,088 + ABI39_RS20555 0.73 -0.2 5,070,219 - ABI39_RS20555 0.84 -0.3 5,070,380 + -0.3 5,070,499 + -0.9 5,070,633 + ABI39_RS20560 0.21 +0.8 5,070,667 + ABI39_RS20560 0.24 +0.4 5,070,668 - ABI39_RS20560 0.24 +0.1 5,070,668 - ABI39_RS20560 0.24 -0.3 5,070,755 + ABI39_RS20560 0.32 -0.9 5,070,759 + ABI39_RS20560 0.32 +0.9 5,070,985 + ABI39_RS20560 0.52 +1.1 5,070,986 - ABI39_RS20560 0.52 +0.1 5,070,988 + ABI39_RS20560 0.52 +1.2 5,071,050 + ABI39_RS20560 0.58 -0.9 5,071,100 + ABI39_RS20560 0.62 -0.1 5,071,100 + ABI39_RS20560 0.62 +1.1 5,071,312 - ABI39_RS20560 0.81 +0.6 5,071,328 - ABI39_RS20560 0.82 -1.3 5,071,376 + ABI39_RS20560 0.86 -1.1 5,071,376 + ABI39_RS20560 0.86 +0.6 5,071,377 - ABI39_RS20560 0.87 +0.3 5,071,434 + -1.1 5,071,435 - +0.2 5,071,650 - -1.0 5,071,650 - +0.8 5,071,728 + ABI39_RS20565 0.16 -0.2 5,071,728 + ABI39_RS20565 0.16 +0.7 5,071,797 + ABI39_RS20565 0.22 +0.8 5,071,921 - ABI39_RS20565 0.33 -1.8 5,071,921 - ABI39_RS20565 0.33 -0.4 5,072,176 + ABI39_RS20565 0.55 +0.7 5,072,251 - ABI39_RS20565 0.62 +0.0 5,072,251 - ABI39_RS20565 0.62 +0.5 5,072,251 - ABI39_RS20565 0.62 -1.0 5,072,256 + ABI39_RS20565 0.62 -3.0 5,072,257 - ABI39_RS20565 0.62 -0.4 5,072,258 + ABI39_RS20565 0.62 +0.8 5,072,259 - ABI39_RS20565 0.62 -0.2 5,072,290 - ABI39_RS20565 0.65 +0.5 5,072,354 - ABI39_RS20565 0.71 -0.9 5,072,415 + ABI39_RS20565 0.76 +0.6
Or see this region's nucleotide sequence