Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS07560

Experiment: L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABI39_RS07550 and ABI39_RS07555 overlap by 4 nucleotidesABI39_RS07555 and ABI39_RS07560 are separated by 206 nucleotidesABI39_RS07560 and ABI39_RS07565 are separated by 112 nucleotidesABI39_RS07565 and ABI39_RS07570 are separated by 30 nucleotides ABI39_RS07550: ABI39_RS07550 - hypothetical protein, at 2,052,298 to 2,053,557 _RS07550 ABI39_RS07555: ABI39_RS07555 - hypothetical protein, at 2,053,554 to 2,053,991 _RS07555 ABI39_RS07560: ABI39_RS07560 - hypothetical protein, at 2,054,198 to 2,054,647 _RS07560 ABI39_RS07565: ABI39_RS07565 - hypothetical protein, at 2,054,760 to 2,055,233 _RS07565 ABI39_RS07570: ABI39_RS07570 - helix-turn-helix domain-containing protein, at 2,055,264 to 2,055,506 _RS07570 Position (kb) 2054 2055Strain fitness (log2 ratio) -2 -1 0 1at 2053.509 kb on - strandat 2053.773 kb on + strand, within ABI39_RS07555at 2053.774 kb on - strand, within ABI39_RS07555at 2053.829 kb on - strand, within ABI39_RS07555at 2054.004 kb on - strandat 2054.100 kb on + strandat 2054.232 kb on - strandat 2054.232 kb on - strandat 2054.491 kb on - strand, within ABI39_RS07560at 2055.486 kb on + strandat 2055.509 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
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2,053,509 - -0.1
2,053,773 + ABI39_RS07555 0.50 -1.9
2,053,774 - ABI39_RS07555 0.50 -1.0
2,053,829 - ABI39_RS07555 0.63 +0.0
2,054,004 - +0.2
2,054,100 + +0.2
2,054,232 - +0.2
2,054,232 - +1.1
2,054,491 - ABI39_RS07560 0.65 -0.7
2,055,486 + +0.6
2,055,509 - +0.3

Or see this region's nucleotide sequence