Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS04275

Experiment: L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABI39_RS04270 and ABI39_RS04275 overlap by 16 nucleotidesABI39_RS04275 and ABI39_RS04280 overlap by 1 nucleotidesABI39_RS04280 and ABI39_RS04285 overlap by 4 nucleotides ABI39_RS04270: ABI39_RS04270 - hypothetical protein, at 1,201,376 to 1,202,746 _RS04270 ABI39_RS04275: ABI39_RS04275 - peptidoglycan DD-metalloendopeptidase family protein, at 1,202,731 to 1,204,065 _RS04275 ABI39_RS04280: ABI39_RS04280 - DUF4292 domain-containing protein, at 1,204,065 to 1,204,898 _RS04280 ABI39_RS04285: ABI39_RS04285 - tetratricopeptide repeat protein, at 1,204,895 to 1,206,703 _RS04285 Position (kb) 1202 1203 1204 1205Strain fitness (log2 ratio) -3 -2 -1 0 1at 1201.859 kb on - strand, within ABI39_RS04270at 1201.885 kb on + strand, within ABI39_RS04270at 1201.933 kb on - strand, within ABI39_RS04270at 1201.933 kb on - strand, within ABI39_RS04270at 1202.015 kb on - strand, within ABI39_RS04270at 1202.023 kb on - strand, within ABI39_RS04270at 1202.133 kb on + strand, within ABI39_RS04270at 1202.273 kb on - strand, within ABI39_RS04270at 1202.290 kb on + strand, within ABI39_RS04270at 1202.309 kb on + strand, within ABI39_RS04270at 1202.323 kb on + strand, within ABI39_RS04270at 1202.441 kb on - strand, within ABI39_RS04270at 1202.447 kb on - strand, within ABI39_RS04270at 1202.475 kb on - strand, within ABI39_RS04270at 1202.617 kb on + strandat 1202.618 kb on - strandat 1202.812 kb on - strandat 1202.839 kb on - strandat 1202.845 kb on - strandat 1202.902 kb on - strand, within ABI39_RS04275at 1202.903 kb on + strand, within ABI39_RS04275at 1202.904 kb on - strand, within ABI39_RS04275at 1202.907 kb on + strand, within ABI39_RS04275at 1202.923 kb on + strand, within ABI39_RS04275at 1202.924 kb on - strand, within ABI39_RS04275at 1202.926 kb on - strand, within ABI39_RS04275at 1202.941 kb on - strand, within ABI39_RS04275at 1203.053 kb on - strand, within ABI39_RS04275at 1203.086 kb on + strand, within ABI39_RS04275at 1203.114 kb on + strand, within ABI39_RS04275at 1203.136 kb on - strand, within ABI39_RS04275at 1203.334 kb on - strand, within ABI39_RS04275at 1203.538 kb on - strand, within ABI39_RS04275at 1203.583 kb on - strand, within ABI39_RS04275at 1203.589 kb on + strand, within ABI39_RS04275at 1203.590 kb on - strand, within ABI39_RS04275at 1203.635 kb on + strand, within ABI39_RS04275at 1203.643 kb on - strand, within ABI39_RS04275at 1203.721 kb on - strand, within ABI39_RS04275at 1203.721 kb on - strand, within ABI39_RS04275at 1203.721 kb on - strand, within ABI39_RS04275at 1203.722 kb on + strand, within ABI39_RS04275at 1203.723 kb on - strand, within ABI39_RS04275at 1203.723 kb on - strand, within ABI39_RS04275at 1203.723 kb on - strand, within ABI39_RS04275at 1203.840 kb on + strand, within ABI39_RS04275at 1203.848 kb on + strand, within ABI39_RS04275at 1204.048 kb on + strandat 1204.049 kb on - strandat 1204.049 kb on - strandat 1204.056 kb on + strandat 1204.070 kb on + strandat 1204.260 kb on - strand, within ABI39_RS04280at 1204.276 kb on - strand, within ABI39_RS04280at 1204.276 kb on - strand, within ABI39_RS04280at 1204.335 kb on - strand, within ABI39_RS04280at 1204.381 kb on - strand, within ABI39_RS04280at 1204.545 kb on + strand, within ABI39_RS04280at 1204.546 kb on - strand, within ABI39_RS04280at 1204.546 kb on - strand, within ABI39_RS04280at 1204.647 kb on + strand, within ABI39_RS04280at 1204.680 kb on + strand, within ABI39_RS04280at 1204.803 kb on - strand, within ABI39_RS04280at 1204.848 kb on - strandat 1204.851 kb on + strandat 1205.053 kb on - strandat 1205.057 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
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1,201,859 - ABI39_RS04270 0.35 -2.0
1,201,885 + ABI39_RS04270 0.37 -0.0
1,201,933 - ABI39_RS04270 0.41 -0.5
1,201,933 - ABI39_RS04270 0.41 +0.7
1,202,015 - ABI39_RS04270 0.47 +0.3
1,202,023 - ABI39_RS04270 0.47 -0.1
1,202,133 + ABI39_RS04270 0.55 +0.9
1,202,273 - ABI39_RS04270 0.65 +0.6
1,202,290 + ABI39_RS04270 0.67 +1.1
1,202,309 + ABI39_RS04270 0.68 +0.3
1,202,323 + ABI39_RS04270 0.69 +0.4
1,202,441 - ABI39_RS04270 0.78 -1.3
1,202,447 - ABI39_RS04270 0.78 +0.2
1,202,475 - ABI39_RS04270 0.80 -1.9
1,202,617 + +1.7
1,202,618 - -0.5
1,202,812 - +0.8
1,202,839 - -0.6
1,202,845 - -0.7
1,202,902 - ABI39_RS04275 0.13 +0.3
1,202,903 + ABI39_RS04275 0.13 -0.1
1,202,904 - ABI39_RS04275 0.13 +1.0
1,202,907 + ABI39_RS04275 0.13 +1.6
1,202,923 + ABI39_RS04275 0.14 -0.0
1,202,924 - ABI39_RS04275 0.14 +0.6
1,202,926 - ABI39_RS04275 0.15 +0.6
1,202,941 - ABI39_RS04275 0.16 -0.8
1,203,053 - ABI39_RS04275 0.24 -1.0
1,203,086 + ABI39_RS04275 0.27 -0.2
1,203,114 + ABI39_RS04275 0.29 +1.6
1,203,136 - ABI39_RS04275 0.30 +0.8
1,203,334 - ABI39_RS04275 0.45 +0.2
1,203,538 - ABI39_RS04275 0.60 +0.7
1,203,583 - ABI39_RS04275 0.64 -0.0
1,203,589 + ABI39_RS04275 0.64 -0.3
1,203,590 - ABI39_RS04275 0.64 -0.5
1,203,635 + ABI39_RS04275 0.68 +1.5
1,203,643 - ABI39_RS04275 0.68 +0.8
1,203,721 - ABI39_RS04275 0.74 +0.3
1,203,721 - ABI39_RS04275 0.74 -0.0
1,203,721 - ABI39_RS04275 0.74 -0.3
1,203,722 + ABI39_RS04275 0.74 -1.6
1,203,723 - ABI39_RS04275 0.74 +0.5
1,203,723 - ABI39_RS04275 0.74 +0.3
1,203,723 - ABI39_RS04275 0.74 -0.7
1,203,840 + ABI39_RS04275 0.83 +0.8
1,203,848 + ABI39_RS04275 0.84 +1.4
1,204,048 + +0.5
1,204,049 - +0.2
1,204,049 - +0.4
1,204,056 + -0.1
1,204,070 + +0.6
1,204,260 - ABI39_RS04280 0.23 -1.0
1,204,276 - ABI39_RS04280 0.25 -0.4
1,204,276 - ABI39_RS04280 0.25 -3.7
1,204,335 - ABI39_RS04280 0.32 +1.6
1,204,381 - ABI39_RS04280 0.38 -0.7
1,204,545 + ABI39_RS04280 0.58 -3.0
1,204,546 - ABI39_RS04280 0.58 -1.4
1,204,546 - ABI39_RS04280 0.58 -3.0
1,204,647 + ABI39_RS04280 0.70 -3.0
1,204,680 + ABI39_RS04280 0.74 -3.0
1,204,803 - ABI39_RS04280 0.88 -1.2
1,204,848 - -1.2
1,204,851 + +0.6
1,205,053 - -0.6
1,205,057 - -2.8

Or see this region's nucleotide sequence