Experiment: L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS00590 and ABI39_RS00595 are separated by 113 nucleotides ABI39_RS00595 and ABI39_RS00600 are separated by 39 nucleotides
ABI39_RS00590: ABI39_RS00590 - glycoside hydrolase family 127 protein, at 166,931 to 168,853
_RS00590
ABI39_RS00595: ABI39_RS00595 - alpha/beta hydrolase, at 168,967 to 169,872
_RS00595
ABI39_RS00600: ABI39_RS00600 - glycoside hydrolase, at 169,912 to 171,546
_RS00600
Position (kb) 168
169
170 Strain fitness (log2 ratio) -2
-1
0
1 at 167.980 kb on - strand, within ABI39_RS00590 at 167.983 kb on + strand, within ABI39_RS00590 at 168.076 kb on + strand, within ABI39_RS00590 at 168.288 kb on - strand, within ABI39_RS00590 at 168.332 kb on + strand, within ABI39_RS00590 at 168.428 kb on + strand, within ABI39_RS00590 at 168.623 kb on + strand, within ABI39_RS00590 at 168.623 kb on + strand, within ABI39_RS00590 at 168.836 kb on - strand at 168.853 kb on + strand at 168.854 kb on - strand at 168.904 kb on - strand at 168.935 kb on + strand at 168.969 kb on - strand at 169.026 kb on + strand at 169.196 kb on - strand, within ABI39_RS00595 at 169.216 kb on + strand, within ABI39_RS00595 at 169.455 kb on + strand, within ABI39_RS00595 at 169.514 kb on - strand, within ABI39_RS00595 at 169.576 kb on - strand, within ABI39_RS00595 at 169.635 kb on + strand, within ABI39_RS00595 at 169.636 kb on - strand, within ABI39_RS00595 at 169.814 kb on - strand at 169.948 kb on + strand at 169.948 kb on + strand at 169.948 kb on + strand at 169.948 kb on + strand at 169.948 kb on + strand at 169.949 kb on - strand at 169.950 kb on + strand at 169.950 kb on + strand at 170.079 kb on - strand, within ABI39_RS00600 at 170.089 kb on + strand, within ABI39_RS00600 at 170.090 kb on - strand, within ABI39_RS00600 at 170.095 kb on - strand, within ABI39_RS00600 at 170.164 kb on + strand, within ABI39_RS00600 at 170.289 kb on + strand, within ABI39_RS00600 at 170.312 kb on - strand, within ABI39_RS00600 at 170.382 kb on + strand, within ABI39_RS00600 at 170.473 kb on + strand, within ABI39_RS00600 at 170.493 kb on + strand, within ABI39_RS00600 at 170.507 kb on + strand, within ABI39_RS00600 at 170.547 kb on + strand, within ABI39_RS00600 at 170.559 kb on + strand, within ABI39_RS00600 at 170.560 kb on - strand, within ABI39_RS00600 at 170.599 kb on - strand, within ABI39_RS00600 at 170.632 kb on - strand, within ABI39_RS00600 at 170.650 kb on + strand, within ABI39_RS00600 at 170.650 kb on + strand, within ABI39_RS00600 at 170.721 kb on + strand, within ABI39_RS00600 at 170.722 kb on - strand, within ABI39_RS00600 at 170.722 kb on - strand, within ABI39_RS00600 at 170.722 kb on - strand, within ABI39_RS00600 at 170.727 kb on + strand, within ABI39_RS00600 at 170.820 kb on + strand, within ABI39_RS00600 at 170.838 kb on + strand, within ABI39_RS00600 at 170.839 kb on - strand, within ABI39_RS00600
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen remove 167,980 - ABI39_RS00590 0.55 -0.7 167,983 + ABI39_RS00590 0.55 -0.0 168,076 + ABI39_RS00590 0.60 -0.4 168,288 - ABI39_RS00590 0.71 +1.1 168,332 + ABI39_RS00590 0.73 -0.0 168,428 + ABI39_RS00590 0.78 -1.3 168,623 + ABI39_RS00590 0.88 -0.5 168,623 + ABI39_RS00590 0.88 +0.5 168,836 - +0.1 168,853 + -0.8 168,854 - -0.8 168,904 - -0.2 168,935 + -0.1 168,969 - +0.4 169,026 + -0.1 169,196 - ABI39_RS00595 0.25 -1.0 169,216 + ABI39_RS00595 0.27 -2.6 169,455 + ABI39_RS00595 0.54 -0.8 169,514 - ABI39_RS00595 0.60 -1.5 169,576 - ABI39_RS00595 0.67 -0.2 169,635 + ABI39_RS00595 0.74 -2.1 169,636 - ABI39_RS00595 0.74 -0.0 169,814 - +0.3 169,948 + -1.5 169,948 + -0.2 169,948 + +0.0 169,948 + -0.7 169,948 + +1.3 169,949 - -0.7 169,950 + +1.2 169,950 + +0.3 170,079 - ABI39_RS00600 0.10 -1.9 170,089 + ABI39_RS00600 0.11 +0.3 170,090 - ABI39_RS00600 0.11 -1.1 170,095 - ABI39_RS00600 0.11 +0.3 170,164 + ABI39_RS00600 0.15 +0.3 170,289 + ABI39_RS00600 0.23 -1.0 170,312 - ABI39_RS00600 0.24 +0.5 170,382 + ABI39_RS00600 0.29 -0.5 170,473 + ABI39_RS00600 0.34 +0.3 170,493 + ABI39_RS00600 0.36 -0.3 170,507 + ABI39_RS00600 0.36 -0.1 170,547 + ABI39_RS00600 0.39 +0.3 170,559 + ABI39_RS00600 0.40 +0.3 170,560 - ABI39_RS00600 0.40 +0.7 170,599 - ABI39_RS00600 0.42 +0.2 170,632 - ABI39_RS00600 0.44 +0.0 170,650 + ABI39_RS00600 0.45 +0.2 170,650 + ABI39_RS00600 0.45 -0.7 170,721 + ABI39_RS00600 0.49 +0.0 170,722 - ABI39_RS00600 0.50 +1.2 170,722 - ABI39_RS00600 0.50 -0.2 170,722 - ABI39_RS00600 0.50 -0.4 170,727 + ABI39_RS00600 0.50 +0.7 170,820 + ABI39_RS00600 0.56 -0.5 170,838 + ABI39_RS00600 0.57 +0.2 170,839 - ABI39_RS00600 0.57 +0.4
Or see this region's nucleotide sequence