Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS03425

Experiment: L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABI39_RS03420 and ABI39_RS03425 are separated by 95 nucleotidesABI39_RS03425 and ABI39_RS03430 are separated by 187 nucleotides ABI39_RS03420: ABI39_RS03420 - glycosyl hydrolase 43 family protein, at 984,885 to 986,426 _RS03420 ABI39_RS03425: ABI39_RS03425 - alpha-galactosidase, at 986,522 to 988,678 _RS03425 ABI39_RS03430: ABI39_RS03430 - AraC family transcriptional regulator, at 988,866 to 989,762 _RS03430 Position (kb) 986 987 988 989Strain fitness (log2 ratio) -3 -2 -1 0 1at 985.523 kb on + strand, within ABI39_RS03420at 985.644 kb on - strand, within ABI39_RS03420at 985.674 kb on + strand, within ABI39_RS03420at 985.724 kb on - strand, within ABI39_RS03420at 985.745 kb on + strand, within ABI39_RS03420at 985.746 kb on - strand, within ABI39_RS03420at 985.790 kb on - strand, within ABI39_RS03420at 985.790 kb on - strand, within ABI39_RS03420at 985.792 kb on + strand, within ABI39_RS03420at 985.793 kb on - strand, within ABI39_RS03420at 985.889 kb on + strand, within ABI39_RS03420at 985.897 kb on - strand, within ABI39_RS03420at 985.936 kb on + strand, within ABI39_RS03420at 985.936 kb on + strand, within ABI39_RS03420at 985.937 kb on - strand, within ABI39_RS03420at 985.937 kb on - strand, within ABI39_RS03420at 985.986 kb on + strand, within ABI39_RS03420at 986.141 kb on + strand, within ABI39_RS03420at 986.173 kb on + strand, within ABI39_RS03420at 986.173 kb on + strand, within ABI39_RS03420at 986.267 kb on + strand, within ABI39_RS03420at 986.267 kb on + strand, within ABI39_RS03420at 986.316 kb on - strandat 986.323 kb on - strandat 986.476 kb on + strandat 986.492 kb on + strandat 986.498 kb on - strandat 986.756 kb on + strand, within ABI39_RS03425at 986.767 kb on + strand, within ABI39_RS03425at 986.787 kb on + strand, within ABI39_RS03425at 986.787 kb on + strand, within ABI39_RS03425at 986.787 kb on + strand, within ABI39_RS03425at 986.788 kb on - strand, within ABI39_RS03425at 986.792 kb on - strand, within ABI39_RS03425at 986.832 kb on + strand, within ABI39_RS03425at 986.833 kb on - strand, within ABI39_RS03425at 986.836 kb on + strand, within ABI39_RS03425at 986.896 kb on - strand, within ABI39_RS03425at 987.001 kb on + strand, within ABI39_RS03425at 987.002 kb on - strand, within ABI39_RS03425at 987.223 kb on - strand, within ABI39_RS03425at 987.229 kb on + strand, within ABI39_RS03425at 987.267 kb on + strand, within ABI39_RS03425at 987.325 kb on + strand, within ABI39_RS03425at 987.358 kb on - strand, within ABI39_RS03425at 987.358 kb on - strand, within ABI39_RS03425at 987.366 kb on - strand, within ABI39_RS03425at 987.409 kb on - strand, within ABI39_RS03425at 987.720 kb on + strand, within ABI39_RS03425at 987.805 kb on + strand, within ABI39_RS03425at 987.823 kb on + strand, within ABI39_RS03425at 987.847 kb on - strand, within ABI39_RS03425at 987.917 kb on + strand, within ABI39_RS03425at 987.937 kb on + strand, within ABI39_RS03425at 987.980 kb on + strand, within ABI39_RS03425at 988.060 kb on + strand, within ABI39_RS03425at 988.060 kb on + strand, within ABI39_RS03425at 988.291 kb on - strand, within ABI39_RS03425at 988.319 kb on - strand, within ABI39_RS03425at 988.377 kb on + strand, within ABI39_RS03425at 988.378 kb on - strand, within ABI39_RS03425at 988.418 kb on - strand, within ABI39_RS03425at 988.421 kb on + strand, within ABI39_RS03425at 988.422 kb on - strand, within ABI39_RS03425at 988.424 kb on + strand, within ABI39_RS03425at 988.425 kb on - strand, within ABI39_RS03425at 988.425 kb on - strand, within ABI39_RS03425at 988.427 kb on - strand, within ABI39_RS03425at 988.446 kb on + strand, within ABI39_RS03425at 988.466 kb on - strandat 988.471 kb on - strandat 988.502 kb on - strandat 988.545 kb on - strandat 988.595 kb on - strandat 988.643 kb on + strandat 988.644 kb on - strandat 988.652 kb on + strandat 988.774 kb on + strandat 988.774 kb on + strandat 988.777 kb on - strandat 988.810 kb on + strandat 988.863 kb on + strandat 988.864 kb on - strandat 988.865 kb on + strandat 988.979 kb on - strand, within ABI39_RS03430at 988.983 kb on + strand, within ABI39_RS03430at 989.048 kb on + strand, within ABI39_RS03430at 989.101 kb on + strand, within ABI39_RS03430at 989.101 kb on + strand, within ABI39_RS03430at 989.129 kb on - strand, within ABI39_RS03430at 989.152 kb on - strand, within ABI39_RS03430at 989.288 kb on - strand, within ABI39_RS03430at 989.291 kb on - strand, within ABI39_RS03430at 989.343 kb on - strand, within ABI39_RS03430at 989.394 kb on - strand, within ABI39_RS03430at 989.421 kb on - strand, within ABI39_RS03430at 989.524 kb on + strand, within ABI39_RS03430at 989.524 kb on + strand, within ABI39_RS03430at 989.677 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
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985,523 + ABI39_RS03420 0.41 -0.0
985,644 - ABI39_RS03420 0.49 +0.3
985,674 + ABI39_RS03420 0.51 +1.0
985,724 - ABI39_RS03420 0.54 -0.3
985,745 + ABI39_RS03420 0.56 -0.5
985,746 - ABI39_RS03420 0.56 -0.8
985,790 - ABI39_RS03420 0.59 +0.1
985,790 - ABI39_RS03420 0.59 -0.2
985,792 + ABI39_RS03420 0.59 -0.1
985,793 - ABI39_RS03420 0.59 +0.2
985,889 + ABI39_RS03420 0.65 +0.1
985,897 - ABI39_RS03420 0.66 -0.5
985,936 + ABI39_RS03420 0.68 -1.5
985,936 + ABI39_RS03420 0.68 +0.2
985,937 - ABI39_RS03420 0.68 -1.4
985,937 - ABI39_RS03420 0.68 -1.1
985,986 + ABI39_RS03420 0.71 +0.6
986,141 + ABI39_RS03420 0.81 +0.5
986,173 + ABI39_RS03420 0.84 -0.7
986,173 + ABI39_RS03420 0.84 -3.1
986,267 + ABI39_RS03420 0.90 -0.1
986,267 + ABI39_RS03420 0.90 +0.2
986,316 - -1.7
986,323 - +0.4
986,476 + +0.5
986,492 + +0.4
986,498 - -0.4
986,756 + ABI39_RS03425 0.11 +0.3
986,767 + ABI39_RS03425 0.11 +0.2
986,787 + ABI39_RS03425 0.12 +0.2
986,787 + ABI39_RS03425 0.12 -0.8
986,787 + ABI39_RS03425 0.12 -0.4
986,788 - ABI39_RS03425 0.12 +0.2
986,792 - ABI39_RS03425 0.13 +1.1
986,832 + ABI39_RS03425 0.14 +0.0
986,833 - ABI39_RS03425 0.14 +0.3
986,836 + ABI39_RS03425 0.15 +1.1
986,896 - ABI39_RS03425 0.17 +0.0
987,001 + ABI39_RS03425 0.22 -0.2
987,002 - ABI39_RS03425 0.22 -1.0
987,223 - ABI39_RS03425 0.32 -0.5
987,229 + ABI39_RS03425 0.33 +0.0
987,267 + ABI39_RS03425 0.35 +0.0
987,325 + ABI39_RS03425 0.37 +1.0
987,358 - ABI39_RS03425 0.39 -0.2
987,358 - ABI39_RS03425 0.39 -0.6
987,366 - ABI39_RS03425 0.39 +0.7
987,409 - ABI39_RS03425 0.41 -1.0
987,720 + ABI39_RS03425 0.56 +0.6
987,805 + ABI39_RS03425 0.59 +0.5
987,823 + ABI39_RS03425 0.60 -0.3
987,847 - ABI39_RS03425 0.61 +0.0
987,917 + ABI39_RS03425 0.65 +0.1
987,937 + ABI39_RS03425 0.66 +0.8
987,980 + ABI39_RS03425 0.68 +0.0
988,060 + ABI39_RS03425 0.71 -0.7
988,060 + ABI39_RS03425 0.71 +0.4
988,291 - ABI39_RS03425 0.82 +0.7
988,319 - ABI39_RS03425 0.83 +0.2
988,377 + ABI39_RS03425 0.86 +0.3
988,378 - ABI39_RS03425 0.86 +1.2
988,418 - ABI39_RS03425 0.88 -0.2
988,421 + ABI39_RS03425 0.88 +0.4
988,422 - ABI39_RS03425 0.88 +0.6
988,424 + ABI39_RS03425 0.88 +0.4
988,425 - ABI39_RS03425 0.88 +0.6
988,425 - ABI39_RS03425 0.88 +0.9
988,427 - ABI39_RS03425 0.88 +0.4
988,446 + ABI39_RS03425 0.89 +0.4
988,466 - -0.6
988,471 - -0.2
988,502 - +0.1
988,545 - +0.5
988,595 - +0.3
988,643 + +0.4
988,644 - +1.6
988,652 + -0.5
988,774 + -0.4
988,774 + +0.1
988,777 - +1.1
988,810 + -0.6
988,863 + -0.5
988,864 - +0.2
988,865 + +0.5
988,979 - ABI39_RS03430 0.13 -0.5
988,983 + ABI39_RS03430 0.13 +0.5
989,048 + ABI39_RS03430 0.20 -0.0
989,101 + ABI39_RS03430 0.26 -0.1
989,101 + ABI39_RS03430 0.26 +0.1
989,129 - ABI39_RS03430 0.29 -0.3
989,152 - ABI39_RS03430 0.32 -1.9
989,288 - ABI39_RS03430 0.47 +0.1
989,291 - ABI39_RS03430 0.47 -1.3
989,343 - ABI39_RS03430 0.53 +1.3
989,394 - ABI39_RS03430 0.59 +0.4
989,421 - ABI39_RS03430 0.62 +1.0
989,524 + ABI39_RS03430 0.73 -0.0
989,524 + ABI39_RS03430 0.73 +0.3
989,677 - -0.1

Or see this region's nucleotide sequence