Experiment: L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS21245 and ABI39_RS23245 are separated by 301 nucleotides ABI39_RS23245 and ABI39_RS21250 are separated by 77 nucleotides ABI39_RS21250 and ABI39_RS21255 overlap by 4 nucleotides ABI39_RS21255 and ABI39_RS21260 are separated by 58 nucleotides
ABI39_RS21245: ABI39_RS21245 - hypothetical protein, at 5,232,234 to 5,232,908
_RS21245
ABI39_RS23245: ABI39_RS23245 - hypothetical protein, at 5,233,210 to 5,233,350
_RS23245
ABI39_RS21250: ABI39_RS21250 - hypothetical protein, at 5,233,428 to 5,234,357
_RS21250
ABI39_RS21255: ABI39_RS21255 - ABC transporter ATP-binding protein, at 5,234,354 to 5,235,031
_RS21255
ABI39_RS21260: ABI39_RS21260 - carboxypeptidase-like regulatory domain-containing protein, at 5,235,090 to 5,237,750
_RS21260
Position (kb) 5233
5234
5235 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5232.493 kb on + strand, within ABI39_RS21245 at 5232.595 kb on + strand, within ABI39_RS21245 at 5232.596 kb on - strand, within ABI39_RS21245 at 5232.721 kb on - strand, within ABI39_RS21245 at 5232.774 kb on - strand, within ABI39_RS21245 at 5232.970 kb on - strand at 5233.053 kb on + strand at 5233.084 kb on + strand at 5233.144 kb on - strand at 5233.273 kb on + strand, within ABI39_RS23245 at 5233.277 kb on + strand, within ABI39_RS23245 at 5233.278 kb on - strand, within ABI39_RS23245 at 5233.342 kb on - strand at 5233.385 kb on - strand at 5233.410 kb on - strand at 5233.427 kb on + strand at 5233.501 kb on + strand at 5233.512 kb on - strand at 5233.541 kb on - strand, within ABI39_RS21250 at 5233.747 kb on + strand, within ABI39_RS21250 at 5233.824 kb on + strand, within ABI39_RS21250 at 5233.847 kb on - strand, within ABI39_RS21250 at 5233.875 kb on + strand, within ABI39_RS21250 at 5233.977 kb on + strand, within ABI39_RS21250 at 5234.102 kb on + strand, within ABI39_RS21250 at 5234.152 kb on - strand, within ABI39_RS21250 at 5234.169 kb on + strand, within ABI39_RS21250 at 5234.237 kb on - strand, within ABI39_RS21250 at 5234.378 kb on - strand at 5234.440 kb on - strand, within ABI39_RS21255 at 5234.481 kb on + strand, within ABI39_RS21255 at 5234.504 kb on + strand, within ABI39_RS21255 at 5234.510 kb on + strand, within ABI39_RS21255 at 5234.576 kb on + strand, within ABI39_RS21255 at 5234.615 kb on - strand, within ABI39_RS21255 at 5234.766 kb on + strand, within ABI39_RS21255 at 5234.812 kb on + strand, within ABI39_RS21255 at 5234.866 kb on - strand, within ABI39_RS21255 at 5234.909 kb on - strand, within ABI39_RS21255 at 5234.985 kb on + strand at 5234.985 kb on + strand at 5234.988 kb on + strand at 5235.069 kb on + strand at 5235.116 kb on + strand at 5235.177 kb on - strand at 5235.209 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen remove 5,232,493 + ABI39_RS21245 0.38 +0.1 5,232,595 + ABI39_RS21245 0.53 +0.3 5,232,596 - ABI39_RS21245 0.54 -0.2 5,232,721 - ABI39_RS21245 0.72 +1.1 5,232,774 - ABI39_RS21245 0.80 +1.2 5,232,970 - -0.2 5,233,053 + +0.0 5,233,084 + +0.1 5,233,144 - +0.4 5,233,273 + ABI39_RS23245 0.45 +1.2 5,233,277 + ABI39_RS23245 0.48 -0.2 5,233,278 - ABI39_RS23245 0.48 -3.1 5,233,342 - -0.1 5,233,385 - +0.4 5,233,410 - +0.2 5,233,427 + -1.4 5,233,501 + -0.1 5,233,512 - +0.3 5,233,541 - ABI39_RS21250 0.12 -0.1 5,233,747 + ABI39_RS21250 0.34 -0.9 5,233,824 + ABI39_RS21250 0.43 -1.4 5,233,847 - ABI39_RS21250 0.45 +0.1 5,233,875 + ABI39_RS21250 0.48 -0.1 5,233,977 + ABI39_RS21250 0.59 +0.8 5,234,102 + ABI39_RS21250 0.72 -0.7 5,234,152 - ABI39_RS21250 0.78 -0.0 5,234,169 + ABI39_RS21250 0.80 -0.4 5,234,237 - ABI39_RS21250 0.87 +1.4 5,234,378 - +0.7 5,234,440 - ABI39_RS21255 0.13 -0.1 5,234,481 + ABI39_RS21255 0.19 -0.1 5,234,504 + ABI39_RS21255 0.22 +0.7 5,234,510 + ABI39_RS21255 0.23 -1.3 5,234,576 + ABI39_RS21255 0.33 +1.3 5,234,615 - ABI39_RS21255 0.38 +1.3 5,234,766 + ABI39_RS21255 0.61 -0.2 5,234,812 + ABI39_RS21255 0.68 -0.4 5,234,866 - ABI39_RS21255 0.76 +0.2 5,234,909 - ABI39_RS21255 0.82 -0.1 5,234,985 + +0.9 5,234,985 + -0.4 5,234,988 + +0.8 5,235,069 + +0.2 5,235,116 + -0.3 5,235,177 - +0.4 5,235,209 + +0.1
Or see this region's nucleotide sequence