Experiment: L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS20690 and ABI39_RS20695 are separated by 16 nucleotides ABI39_RS20695 and ABI39_RS20700 are separated by 247 nucleotides ABI39_RS20700 and ABI39_RS20705 overlap by 43 nucleotides ABI39_RS20705 and ABI39_RS20710 are separated by 73 nucleotides
ABI39_RS20690: ABI39_RS20690 - glutamate synthase subunit beta, at 5,106,788 to 5,108,128
_RS20690
ABI39_RS20695: ABI39_RS20695 - asparagine synthase B, at 5,108,145 to 5,109,815
_RS20695
ABI39_RS20700: ABI39_RS20700 - AAA family ATPase, at 5,110,063 to 5,110,344
_RS20700
ABI39_RS20705: ABI39_RS20705 - hypothetical protein, at 5,110,302 to 5,110,520
_RS20705
ABI39_RS20710: ABI39_RS20710 - carboxypeptidase regulatory-like domain-containing protein, at 5,110,594 to 5,111,418
_RS20710
Position (kb) 5108
5109
5110 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 5107.185 kb on - strand, within ABI39_RS20690 at 5107.527 kb on + strand, within ABI39_RS20690 at 5107.840 kb on + strand, within ABI39_RS20690 at 5107.840 kb on + strand, within ABI39_RS20690 at 5107.993 kb on - strand, within ABI39_RS20690 at 5108.144 kb on + strand at 5108.144 kb on + strand at 5108.145 kb on - strand at 5108.173 kb on + strand at 5108.259 kb on + strand at 5108.260 kb on - strand at 5108.581 kb on + strand, within ABI39_RS20695 at 5108.582 kb on - strand, within ABI39_RS20695 at 5108.582 kb on - strand, within ABI39_RS20695 at 5108.587 kb on + strand, within ABI39_RS20695 at 5108.611 kb on + strand, within ABI39_RS20695 at 5108.612 kb on - strand, within ABI39_RS20695 at 5108.780 kb on - strand, within ABI39_RS20695 at 5108.990 kb on - strand, within ABI39_RS20695 at 5109.043 kb on - strand, within ABI39_RS20695 at 5109.085 kb on - strand, within ABI39_RS20695 at 5109.272 kb on + strand, within ABI39_RS20695 at 5109.277 kb on + strand, within ABI39_RS20695 at 5109.479 kb on - strand, within ABI39_RS20695 at 5109.522 kb on - strand, within ABI39_RS20695 at 5110.038 kb on - strand at 5110.136 kb on - strand, within ABI39_RS20700 at 5110.157 kb on - strand, within ABI39_RS20700 at 5110.186 kb on + strand, within ABI39_RS20700 at 5110.195 kb on - strand, within ABI39_RS20700 at 5110.249 kb on + strand, within ABI39_RS20700 at 5110.249 kb on + strand, within ABI39_RS20700 at 5110.407 kb on + strand, within ABI39_RS20705 at 5110.458 kb on + strand, within ABI39_RS20705 at 5110.484 kb on + strand, within ABI39_RS20705 at 5110.510 kb on + strand at 5110.510 kb on + strand at 5110.511 kb on - strand at 5110.708 kb on + strand, within ABI39_RS20710 at 5110.771 kb on - strand, within ABI39_RS20710 at 5110.802 kb on - strand, within ABI39_RS20710
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen remove 5,107,185 - ABI39_RS20690 0.30 -2.0 5,107,527 + ABI39_RS20690 0.55 -3.5 5,107,840 + ABI39_RS20690 0.78 -0.9 5,107,840 + ABI39_RS20690 0.78 -1.0 5,107,993 - ABI39_RS20690 0.90 -2.2 5,108,144 + -3.4 5,108,144 + -1.5 5,108,145 - -2.4 5,108,173 + -3.0 5,108,259 + -0.8 5,108,260 - -2.5 5,108,581 + ABI39_RS20695 0.26 -4.3 5,108,582 - ABI39_RS20695 0.26 -2.3 5,108,582 - ABI39_RS20695 0.26 -1.8 5,108,587 + ABI39_RS20695 0.26 -1.9 5,108,611 + ABI39_RS20695 0.28 +0.2 5,108,612 - ABI39_RS20695 0.28 -1.7 5,108,780 - ABI39_RS20695 0.38 -1.4 5,108,990 - ABI39_RS20695 0.51 -3.7 5,109,043 - ABI39_RS20695 0.54 -0.4 5,109,085 - ABI39_RS20695 0.56 -1.3 5,109,272 + ABI39_RS20695 0.67 -1.3 5,109,277 + ABI39_RS20695 0.68 -0.1 5,109,479 - ABI39_RS20695 0.80 -1.8 5,109,522 - ABI39_RS20695 0.82 -1.2 5,110,038 - +0.7 5,110,136 - ABI39_RS20700 0.26 -0.1 5,110,157 - ABI39_RS20700 0.33 -0.8 5,110,186 + ABI39_RS20700 0.44 -0.2 5,110,195 - ABI39_RS20700 0.47 -1.0 5,110,249 + ABI39_RS20700 0.66 -0.0 5,110,249 + ABI39_RS20700 0.66 -0.6 5,110,407 + ABI39_RS20705 0.48 -0.7 5,110,458 + ABI39_RS20705 0.71 -1.2 5,110,484 + ABI39_RS20705 0.83 -0.3 5,110,510 + -0.1 5,110,510 + +0.1 5,110,511 - +0.2 5,110,708 + ABI39_RS20710 0.14 +0.3 5,110,771 - ABI39_RS20710 0.21 -0.1 5,110,802 - ABI39_RS20710 0.25 +0.3
Or see this region's nucleotide sequence