Experiment: L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS03360 and ABI39_RS03365 are separated by 114 nucleotides ABI39_RS03365 and ABI39_RS03370 are separated by 18 nucleotides ABI39_RS03370 and ABI39_RS03375 are separated by 50 nucleotides
ABI39_RS03360: ABI39_RS03360 - MATE family efflux transporter, at 971,253 to 972,545
_RS03360
ABI39_RS03365: ABI39_RS03365 - hypothetical protein, at 972,660 to 973,244
_RS03365
ABI39_RS03370: ABI39_RS03370 - helix-turn-helix transcriptional regulator, at 973,263 to 974,033
_RS03370
ABI39_RS03375: ABI39_RS03375 - alpha-galactosidase, at 974,084 to 975,691
_RS03375
Position (kb) 973
974
975 Strain fitness (log2 ratio) -1
0
1 at 972.319 kb on + strand, within ABI39_RS03360 at 972.415 kb on - strand, within ABI39_RS03360 at 972.448 kb on + strand at 972.448 kb on + strand at 972.448 kb on + strand at 972.449 kb on - strand at 972.449 kb on - strand at 972.449 kb on - strand at 972.450 kb on + strand at 972.468 kb on + strand at 972.470 kb on + strand at 972.470 kb on + strand at 972.471 kb on - strand at 972.603 kb on + strand at 972.647 kb on + strand at 972.769 kb on + strand, within ABI39_RS03365 at 972.826 kb on - strand, within ABI39_RS03365 at 972.826 kb on - strand, within ABI39_RS03365 at 972.916 kb on + strand, within ABI39_RS03365 at 973.064 kb on + strand, within ABI39_RS03365 at 973.094 kb on - strand, within ABI39_RS03365 at 973.214 kb on + strand at 973.352 kb on + strand, within ABI39_RS03370 at 973.361 kb on + strand, within ABI39_RS03370 at 973.373 kb on + strand, within ABI39_RS03370 at 973.425 kb on + strand, within ABI39_RS03370 at 973.521 kb on - strand, within ABI39_RS03370 at 973.674 kb on + strand, within ABI39_RS03370 at 973.679 kb on + strand, within ABI39_RS03370 at 973.714 kb on + strand, within ABI39_RS03370 at 973.789 kb on + strand, within ABI39_RS03370 at 973.816 kb on - strand, within ABI39_RS03370 at 973.880 kb on + strand, within ABI39_RS03370 at 973.883 kb on - strand, within ABI39_RS03370 at 973.884 kb on + strand, within ABI39_RS03370 at 973.885 kb on - strand, within ABI39_RS03370 at 973.923 kb on + strand, within ABI39_RS03370 at 973.968 kb on + strand at 973.969 kb on - strand at 974.025 kb on + strand at 974.040 kb on - strand at 974.054 kb on + strand at 974.162 kb on - strand at 974.164 kb on - strand at 974.334 kb on + strand, within ABI39_RS03375 at 974.421 kb on + strand, within ABI39_RS03375 at 974.423 kb on + strand, within ABI39_RS03375 at 974.424 kb on - strand, within ABI39_RS03375 at 974.577 kb on - strand, within ABI39_RS03375 at 974.613 kb on - strand, within ABI39_RS03375 at 974.630 kb on + strand, within ABI39_RS03375 at 974.631 kb on - strand, within ABI39_RS03375 at 974.657 kb on - strand, within ABI39_RS03375 at 974.663 kb on - strand, within ABI39_RS03375 at 974.685 kb on + strand, within ABI39_RS03375 at 974.685 kb on + strand, within ABI39_RS03375 at 974.742 kb on + strand, within ABI39_RS03375 at 974.743 kb on - strand, within ABI39_RS03375 at 974.769 kb on + strand, within ABI39_RS03375 at 974.832 kb on - strand, within ABI39_RS03375 at 974.954 kb on - strand, within ABI39_RS03375 at 975.016 kb on + strand, within ABI39_RS03375
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen remove 972,319 + ABI39_RS03360 0.82 -0.2 972,415 - ABI39_RS03360 0.90 -0.6 972,448 + +0.7 972,448 + -0.0 972,448 + -0.2 972,449 - +0.2 972,449 - -0.8 972,449 - -1.1 972,450 + +0.3 972,468 + +0.2 972,470 + +1.0 972,470 + -0.8 972,471 - +0.9 972,603 + -0.0 972,647 + +0.3 972,769 + ABI39_RS03365 0.19 +0.3 972,826 - ABI39_RS03365 0.28 -0.5 972,826 - ABI39_RS03365 0.28 -0.0 972,916 + ABI39_RS03365 0.44 -0.1 973,064 + ABI39_RS03365 0.69 +0.1 973,094 - ABI39_RS03365 0.74 -0.7 973,214 + -0.5 973,352 + ABI39_RS03370 0.12 -0.6 973,361 + ABI39_RS03370 0.13 -0.9 973,373 + ABI39_RS03370 0.14 -0.9 973,425 + ABI39_RS03370 0.21 +0.4 973,521 - ABI39_RS03370 0.33 -0.1 973,674 + ABI39_RS03370 0.53 +0.2 973,679 + ABI39_RS03370 0.54 +0.3 973,714 + ABI39_RS03370 0.58 -1.7 973,789 + ABI39_RS03370 0.68 -1.2 973,816 - ABI39_RS03370 0.72 +0.2 973,880 + ABI39_RS03370 0.80 -1.1 973,883 - ABI39_RS03370 0.80 -0.2 973,884 + ABI39_RS03370 0.81 +0.3 973,885 - ABI39_RS03370 0.81 +0.2 973,923 + ABI39_RS03370 0.86 +0.3 973,968 + -0.2 973,969 - -1.0 974,025 + -0.3 974,040 - +0.9 974,054 + -0.2 974,162 - +0.3 974,164 - +0.4 974,334 + ABI39_RS03375 0.16 +0.7 974,421 + ABI39_RS03375 0.21 +0.2 974,423 + ABI39_RS03375 0.21 -0.9 974,424 - ABI39_RS03375 0.21 +0.1 974,577 - ABI39_RS03375 0.31 +0.1 974,613 - ABI39_RS03375 0.33 +0.1 974,630 + ABI39_RS03375 0.34 -0.5 974,631 - ABI39_RS03375 0.34 -0.9 974,657 - ABI39_RS03375 0.36 +0.2 974,663 - ABI39_RS03375 0.36 +0.4 974,685 + ABI39_RS03375 0.37 +0.6 974,685 + ABI39_RS03375 0.37 -0.4 974,742 + ABI39_RS03375 0.41 +0.3 974,743 - ABI39_RS03375 0.41 +0.2 974,769 + ABI39_RS03375 0.43 -0.6 974,832 - ABI39_RS03375 0.47 -0.4 974,954 - ABI39_RS03375 0.54 -0.4 975,016 + ABI39_RS03375 0.58 -0.8
Or see this region's nucleotide sequence