Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS00985

Experiment: L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABI39_RS00980 and ABI39_RS00985 are separated by 140 nucleotidesABI39_RS00985 and ABI39_RS00990 are separated by 118 nucleotides ABI39_RS00980: ABI39_RS00980 - glycoside hydrolase, at 313,561 to 316,848 _RS00980 ABI39_RS00985: ABI39_RS00985 - glycoside hydrolase family 88 protein, at 316,989 to 318,122 _RS00985 ABI39_RS00990: ABI39_RS00990 - beta-galactosidase, at 318,241 to 320,355 _RS00990 Position (kb) 316 317 318 319Strain fitness (log2 ratio) -1 0 1at 316.061 kb on + strand, within ABI39_RS00980at 316.087 kb on - strand, within ABI39_RS00980at 316.189 kb on + strand, within ABI39_RS00980at 316.192 kb on - strand, within ABI39_RS00980at 316.194 kb on - strand, within ABI39_RS00980at 316.212 kb on - strand, within ABI39_RS00980at 316.212 kb on - strand, within ABI39_RS00980at 316.236 kb on - strand, within ABI39_RS00980at 316.236 kb on - strand, within ABI39_RS00980at 316.236 kb on - strand, within ABI39_RS00980at 316.275 kb on + strand, within ABI39_RS00980at 316.425 kb on - strand, within ABI39_RS00980at 316.521 kb on + strandat 316.545 kb on + strandat 316.545 kb on + strandat 316.748 kb on + strandat 316.748 kb on + strandat 316.793 kb on + strandat 316.867 kb on - strandat 316.905 kb on + strandat 317.095 kb on + strandat 317.197 kb on - strand, within ABI39_RS00985at 317.200 kb on - strand, within ABI39_RS00985at 317.200 kb on - strand, within ABI39_RS00985at 317.250 kb on - strand, within ABI39_RS00985at 317.250 kb on - strand, within ABI39_RS00985at 317.253 kb on + strand, within ABI39_RS00985at 317.254 kb on - strand, within ABI39_RS00985at 317.325 kb on + strand, within ABI39_RS00985at 317.343 kb on + strand, within ABI39_RS00985at 317.344 kb on - strand, within ABI39_RS00985at 317.358 kb on - strand, within ABI39_RS00985at 317.399 kb on + strand, within ABI39_RS00985at 317.403 kb on - strand, within ABI39_RS00985at 317.404 kb on + strand, within ABI39_RS00985at 317.404 kb on + strand, within ABI39_RS00985at 317.404 kb on + strand, within ABI39_RS00985at 317.405 kb on - strand, within ABI39_RS00985at 317.405 kb on - strand, within ABI39_RS00985at 317.408 kb on + strand, within ABI39_RS00985at 317.539 kb on - strand, within ABI39_RS00985at 317.545 kb on - strand, within ABI39_RS00985at 317.545 kb on - strand, within ABI39_RS00985at 317.546 kb on + strand, within ABI39_RS00985at 317.577 kb on + strand, within ABI39_RS00985at 317.640 kb on - strand, within ABI39_RS00985at 317.682 kb on + strand, within ABI39_RS00985at 317.744 kb on + strand, within ABI39_RS00985at 317.812 kb on + strand, within ABI39_RS00985at 317.872 kb on + strand, within ABI39_RS00985at 317.872 kb on + strand, within ABI39_RS00985at 318.120 kb on + strandat 318.167 kb on - strandat 318.234 kb on + strandat 318.250 kb on - strandat 318.340 kb on - strandat 318.396 kb on - strandat 318.401 kb on - strandat 318.401 kb on - strandat 318.433 kb on + strandat 318.489 kb on - strand, within ABI39_RS00990at 318.489 kb on - strand, within ABI39_RS00990at 318.493 kb on - strand, within ABI39_RS00990at 318.513 kb on + strand, within ABI39_RS00990at 318.514 kb on - strand, within ABI39_RS00990at 318.557 kb on + strand, within ABI39_RS00990at 318.773 kb on - strand, within ABI39_RS00990at 318.797 kb on - strand, within ABI39_RS00990at 318.813 kb on + strand, within ABI39_RS00990at 318.818 kb on - strand, within ABI39_RS00990at 318.854 kb on - strand, within ABI39_RS00990at 318.936 kb on - strand, within ABI39_RS00990at 318.958 kb on - strand, within ABI39_RS00990

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
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316,061 + ABI39_RS00980 0.76 -0.7
316,087 - ABI39_RS00980 0.77 -1.4
316,189 + ABI39_RS00980 0.80 +0.3
316,192 - ABI39_RS00980 0.80 +0.2
316,194 - ABI39_RS00980 0.80 +0.2
316,212 - ABI39_RS00980 0.81 +0.0
316,212 - ABI39_RS00980 0.81 +0.5
316,236 - ABI39_RS00980 0.81 +0.1
316,236 - ABI39_RS00980 0.81 -0.8
316,236 - ABI39_RS00980 0.81 -0.2
316,275 + ABI39_RS00980 0.83 +0.0
316,425 - ABI39_RS00980 0.87 +0.7
316,521 + +0.2
316,545 + +0.2
316,545 + +0.5
316,748 + +0.5
316,748 + +1.3
316,793 + +0.5
316,867 - -0.3
316,905 + +0.5
317,095 + +0.5
317,197 - ABI39_RS00985 0.18 -0.1
317,200 - ABI39_RS00985 0.19 -0.2
317,200 - ABI39_RS00985 0.19 +0.4
317,250 - ABI39_RS00985 0.23 +0.8
317,250 - ABI39_RS00985 0.23 -0.3
317,253 + ABI39_RS00985 0.23 -1.1
317,254 - ABI39_RS00985 0.23 +1.1
317,325 + ABI39_RS00985 0.30 +1.2
317,343 + ABI39_RS00985 0.31 +1.6
317,344 - ABI39_RS00985 0.31 -0.1
317,358 - ABI39_RS00985 0.33 -0.5
317,399 + ABI39_RS00985 0.36 -0.3
317,403 - ABI39_RS00985 0.37 +0.9
317,404 + ABI39_RS00985 0.37 +0.8
317,404 + ABI39_RS00985 0.37 +1.2
317,404 + ABI39_RS00985 0.37 +0.6
317,405 - ABI39_RS00985 0.37 -0.8
317,405 - ABI39_RS00985 0.37 +0.3
317,408 + ABI39_RS00985 0.37 +1.4
317,539 - ABI39_RS00985 0.49 -0.1
317,545 - ABI39_RS00985 0.49 +0.7
317,545 - ABI39_RS00985 0.49 +0.7
317,546 + ABI39_RS00985 0.49 +0.4
317,577 + ABI39_RS00985 0.52 -0.2
317,640 - ABI39_RS00985 0.57 +0.3
317,682 + ABI39_RS00985 0.61 -1.2
317,744 + ABI39_RS00985 0.67 +1.6
317,812 + ABI39_RS00985 0.73 +1.3
317,872 + ABI39_RS00985 0.78 +1.3
317,872 + ABI39_RS00985 0.78 +0.5
318,120 + +0.6
318,167 - +0.6
318,234 + +0.2
318,250 - +0.3
318,340 - -0.1
318,396 - +0.2
318,401 - -0.5
318,401 - +0.5
318,433 + -1.3
318,489 - ABI39_RS00990 0.12 -0.8
318,489 - ABI39_RS00990 0.12 -0.9
318,493 - ABI39_RS00990 0.12 +1.2
318,513 + ABI39_RS00990 0.13 -0.1
318,514 - ABI39_RS00990 0.13 -0.4
318,557 + ABI39_RS00990 0.15 -1.0
318,773 - ABI39_RS00990 0.25 +0.0
318,797 - ABI39_RS00990 0.26 +0.4
318,813 + ABI39_RS00990 0.27 +0.3
318,818 - ABI39_RS00990 0.27 +0.1
318,854 - ABI39_RS00990 0.29 -0.1
318,936 - ABI39_RS00990 0.33 +0.0
318,958 - ABI39_RS00990 0.34 +0.6

Or see this region's nucleotide sequence