Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS05155

Experiment: L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABI39_RS05150 and ABI39_RS05155 are separated by 39 nucleotidesABI39_RS05155 and ABI39_RS05160 are separated by 4 nucleotidesABI39_RS05160 and ABI39_RS05165 overlap by 1 nucleotides ABI39_RS05150: ABI39_RS05150 - mannonate dehydratase, at 1,439,096 to 1,440,271 _RS05150 ABI39_RS05155: ABI39_RS05155 - SDR family oxidoreductase, at 1,440,311 to 1,441,123 _RS05155 ABI39_RS05160: ABI39_RS05160 - WbqC family protein, at 1,441,128 to 1,441,784 _RS05160 ABI39_RS05165: ABI39_RS05165 - signal peptidase I, at 1,441,784 to 1,442,647 _RS05165 Position (kb) 1440 1441 1442Strain fitness (log2 ratio) -3 -2 -1 0 1at 1439.476 kb on + strand, within ABI39_RS05150at 1439.477 kb on - strand, within ABI39_RS05150at 1439.480 kb on + strand, within ABI39_RS05150at 1439.542 kb on + strand, within ABI39_RS05150at 1439.699 kb on - strand, within ABI39_RS05150at 1439.735 kb on - strand, within ABI39_RS05150at 1439.911 kb on + strand, within ABI39_RS05150at 1439.911 kb on + strand, within ABI39_RS05150at 1439.911 kb on + strand, within ABI39_RS05150at 1439.912 kb on - strand, within ABI39_RS05150at 1439.912 kb on - strand, within ABI39_RS05150at 1439.970 kb on + strand, within ABI39_RS05150at 1439.971 kb on - strand, within ABI39_RS05150at 1439.971 kb on - strand, within ABI39_RS05150at 1439.971 kb on - strand, within ABI39_RS05150at 1439.975 kb on - strand, within ABI39_RS05150at 1440.049 kb on + strand, within ABI39_RS05150at 1440.049 kb on + strand, within ABI39_RS05150at 1440.146 kb on + strand, within ABI39_RS05150at 1440.147 kb on - strand, within ABI39_RS05150at 1440.170 kb on + strandat 1440.170 kb on + strandat 1440.171 kb on - strandat 1440.301 kb on + strandat 1440.472 kb on + strand, within ABI39_RS05155at 1440.475 kb on - strand, within ABI39_RS05155at 1440.478 kb on + strand, within ABI39_RS05155at 1440.479 kb on - strand, within ABI39_RS05155at 1440.479 kb on - strand, within ABI39_RS05155at 1440.638 kb on + strand, within ABI39_RS05155at 1440.722 kb on + strand, within ABI39_RS05155at 1440.723 kb on - strand, within ABI39_RS05155at 1440.833 kb on - strand, within ABI39_RS05155at 1440.874 kb on - strand, within ABI39_RS05155at 1441.051 kb on + strandat 1441.109 kb on - strandat 1441.972 kb on - strand, within ABI39_RS05165at 1442.021 kb on - strand, within ABI39_RS05165at 1442.024 kb on - strand, within ABI39_RS05165at 1442.027 kb on - strand, within ABI39_RS05165at 1442.055 kb on - strand, within ABI39_RS05165at 1442.108 kb on - strand, within ABI39_RS05165at 1442.119 kb on - strand, within ABI39_RS05165

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
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1,439,476 + ABI39_RS05150 0.32 -0.1
1,439,477 - ABI39_RS05150 0.32 -0.6
1,439,480 + ABI39_RS05150 0.33 -0.5
1,439,542 + ABI39_RS05150 0.38 +0.6
1,439,699 - ABI39_RS05150 0.51 +0.3
1,439,735 - ABI39_RS05150 0.54 -0.9
1,439,911 + ABI39_RS05150 0.69 -0.1
1,439,911 + ABI39_RS05150 0.69 +0.9
1,439,911 + ABI39_RS05150 0.69 -2.0
1,439,912 - ABI39_RS05150 0.69 +0.2
1,439,912 - ABI39_RS05150 0.69 -0.2
1,439,970 + ABI39_RS05150 0.74 +0.9
1,439,971 - ABI39_RS05150 0.74 -0.9
1,439,971 - ABI39_RS05150 0.74 -2.8
1,439,971 - ABI39_RS05150 0.74 +1.1
1,439,975 - ABI39_RS05150 0.75 -0.4
1,440,049 + ABI39_RS05150 0.81 +0.3
1,440,049 + ABI39_RS05150 0.81 -0.4
1,440,146 + ABI39_RS05150 0.89 +1.1
1,440,147 - ABI39_RS05150 0.89 -0.2
1,440,170 + +0.0
1,440,170 + +1.2
1,440,171 - -0.1
1,440,301 + -0.9
1,440,472 + ABI39_RS05155 0.20 +0.5
1,440,475 - ABI39_RS05155 0.20 +0.3
1,440,478 + ABI39_RS05155 0.21 +0.2
1,440,479 - ABI39_RS05155 0.21 +0.1
1,440,479 - ABI39_RS05155 0.21 -0.1
1,440,638 + ABI39_RS05155 0.40 -0.8
1,440,722 + ABI39_RS05155 0.51 -1.3
1,440,723 - ABI39_RS05155 0.51 +0.3
1,440,833 - ABI39_RS05155 0.64 -1.1
1,440,874 - ABI39_RS05155 0.69 -0.6
1,441,051 + -0.3
1,441,109 - -0.4
1,441,972 - ABI39_RS05165 0.22 +0.1
1,442,021 - ABI39_RS05165 0.27 -0.4
1,442,024 - ABI39_RS05165 0.28 +0.3
1,442,027 - ABI39_RS05165 0.28 -0.1
1,442,055 - ABI39_RS05165 0.31 -0.0
1,442,108 - ABI39_RS05165 0.38 -1.3
1,442,119 - ABI39_RS05165 0.39 +1.2

Or see this region's nucleotide sequence