Experiment: L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS01090 and ABI39_RS01095 are separated by 11 nucleotides ABI39_RS01095 and ABI39_RS01100 are separated by 2 nucleotides ABI39_RS01100 and ABI39_RS01105 overlap by 14 nucleotides
ABI39_RS01090: ABI39_RS01090 - FimB/Mfa2 family fimbrial subunit, at 347,767 to 348,717
_RS01090
ABI39_RS01095: ABI39_RS01095 - ABC transporter ATP-binding protein, at 348,729 to 349,388
_RS01095
ABI39_RS01100: ABI39_RS01100 - tRNA threonylcarbamoyladenosine dehydratase, at 349,391 to 350,113
_RS01100
ABI39_RS01105: ABI39_RS01105 - cation:proton antiporter, at 350,100 to 352,247
_RS01105
Position (kb) 349
350
351 Strain fitness (log2 ratio) -1
0
1 at 348.632 kb on + strand at 348.727 kb on + strand at 348.756 kb on + strand at 348.757 kb on - strand at 349.447 kb on - strand at 349.610 kb on - strand, within ABI39_RS01100 at 349.670 kb on - strand, within ABI39_RS01100 at 349.703 kb on - strand, within ABI39_RS01100 at 349.707 kb on - strand, within ABI39_RS01100 at 349.707 kb on - strand, within ABI39_RS01100 at 349.709 kb on - strand, within ABI39_RS01100 at 349.709 kb on - strand, within ABI39_RS01100 at 349.787 kb on - strand, within ABI39_RS01100 at 350.057 kb on - strand at 350.097 kb on - strand at 350.159 kb on - strand at 350.267 kb on - strand at 350.719 kb on - strand, within ABI39_RS01105 at 350.880 kb on - strand, within ABI39_RS01105 at 350.968 kb on - strand, within ABI39_RS01105 at 351.093 kb on - strand, within ABI39_RS01105
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen remove 348,632 + +1.0 348,727 + -0.1 348,756 + -0.1 348,757 - -0.6 349,447 - -0.8 349,610 - ABI39_RS01100 0.30 -1.5 349,670 - ABI39_RS01100 0.39 +0.0 349,703 - ABI39_RS01100 0.43 +1.5 349,707 - ABI39_RS01100 0.44 -1.1 349,707 - ABI39_RS01100 0.44 -0.9 349,709 - ABI39_RS01100 0.44 +0.4 349,709 - ABI39_RS01100 0.44 +1.5 349,787 - ABI39_RS01100 0.55 -0.1 350,057 - -0.6 350,097 - +0.3 350,159 - +0.4 350,267 - -0.4 350,719 - ABI39_RS01105 0.29 +1.3 350,880 - ABI39_RS01105 0.36 -0.3 350,968 - ABI39_RS01105 0.40 +1.1 351,093 - ABI39_RS01105 0.46 -0.9
Or see this region's nucleotide sequence