Experiment: Bas38
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NOLOHH_24355 and NOLOHH_24360 are separated by 110 nucleotides NOLOHH_24360 and NOLOHH_24365 overlap by 4 nucleotides NOLOHH_24365 and NOLOHH_24370 are separated by 83 nucleotides NOLOHH_24370 and NOLOHH_24375 are separated by 71 nucleotides NOLOHH_24375 and NOLOHH_24380 are separated by 584 nucleotides
NOLOHH_24355: NOLOHH_24355 - hypothetical protein, at 20,922 to 21,065
_24355
NOLOHH_24360: NOLOHH_24360 - YqjK-like protein, at 21,176 to 21,469
_24360
NOLOHH_24365: NOLOHH_24365 - hypothetical protein, at 21,466 to 21,867
_24365
NOLOHH_24370: NOLOHH_24370 - hypothetical protein, at 21,951 to 22,304
_24370
NOLOHH_24375: NOLOHH_24375 - CsbD family protein, at 22,376 to 22,624
_24375
NOLOHH_24380: NOLOHH_24380 - transcriptional regulator, at 23,209 to 23,526
_24380
Position (kb) 21
22
23 Strain fitness (log2 ratio) -2
-1
0
1
2 at 20.977 kb on + strand, within NOLOHH_24355 at 20.977 kb on + strand, within NOLOHH_24355 at 20.977 kb on + strand, within NOLOHH_24355 at 20.978 kb on - strand, within NOLOHH_24355 at 20.978 kb on - strand, within NOLOHH_24355 at 20.978 kb on - strand, within NOLOHH_24355 at 20.978 kb on - strand, within NOLOHH_24355 at 20.979 kb on + strand, within NOLOHH_24355 at 20.980 kb on - strand, within NOLOHH_24355 at 21.027 kb on - strand, within NOLOHH_24355 at 21.160 kb on + strand at 21.165 kb on + strand at 21.167 kb on + strand at 21.167 kb on + strand at 21.167 kb on + strand at 21.168 kb on - strand at 21.206 kb on - strand, within NOLOHH_24360 at 21.212 kb on + strand, within NOLOHH_24360 at 21.282 kb on + strand, within NOLOHH_24360 at 21.283 kb on - strand, within NOLOHH_24360 at 21.283 kb on - strand, within NOLOHH_24360 at 21.283 kb on - strand, within NOLOHH_24360 at 21.283 kb on - strand, within NOLOHH_24360 at 21.283 kb on - strand, within NOLOHH_24360 at 21.331 kb on - strand, within NOLOHH_24360 at 21.332 kb on + strand, within NOLOHH_24360 at 21.333 kb on - strand, within NOLOHH_24360 at 21.333 kb on - strand, within NOLOHH_24360 at 21.333 kb on - strand, within NOLOHH_24360 at 21.527 kb on - strand, within NOLOHH_24365 at 21.613 kb on + strand, within NOLOHH_24365 at 21.613 kb on + strand, within NOLOHH_24365 at 21.614 kb on - strand, within NOLOHH_24365 at 21.667 kb on + strand, within NOLOHH_24365 at 21.680 kb on - strand, within NOLOHH_24365 at 21.726 kb on + strand, within NOLOHH_24365 at 21.811 kb on + strand, within NOLOHH_24365 at 21.812 kb on - strand, within NOLOHH_24365 at 21.812 kb on - strand, within NOLOHH_24365 at 21.812 kb on - strand, within NOLOHH_24365 at 21.820 kb on + strand, within NOLOHH_24365 at 21.972 kb on + strand at 21.973 kb on - strand at 21.973 kb on - strand at 22.072 kb on - strand, within NOLOHH_24370 at 22.143 kb on - strand, within NOLOHH_24370 at 22.264 kb on - strand, within NOLOHH_24370 at 22.309 kb on + strand at 22.517 kb on - strand, within NOLOHH_24375 at 22.625 kb on - strand at 22.866 kb on - strand at 22.866 kb on - strand at 23.057 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas38 remove 20,977 + NOLOHH_24355 0.38 -0.3 20,977 + NOLOHH_24355 0.38 -1.6 20,977 + NOLOHH_24355 0.38 +0.8 20,978 - NOLOHH_24355 0.39 -0.3 20,978 - NOLOHH_24355 0.39 +1.8 20,978 - NOLOHH_24355 0.39 +1.1 20,978 - NOLOHH_24355 0.39 +0.2 20,979 + NOLOHH_24355 0.40 -0.7 20,980 - NOLOHH_24355 0.40 -0.1 21,027 - NOLOHH_24355 0.73 -0.2 21,160 + -0.3 21,165 + -1.8 21,167 + +0.4 21,167 + +0.2 21,167 + +0.1 21,168 - -0.9 21,206 - NOLOHH_24360 0.10 +1.6 21,212 + NOLOHH_24360 0.12 +0.6 21,282 + NOLOHH_24360 0.36 +0.1 21,283 - NOLOHH_24360 0.36 -1.3 21,283 - NOLOHH_24360 0.36 -0.3 21,283 - NOLOHH_24360 0.36 -0.7 21,283 - NOLOHH_24360 0.36 +0.1 21,283 - NOLOHH_24360 0.36 -0.3 21,331 - NOLOHH_24360 0.53 +0.7 21,332 + NOLOHH_24360 0.53 +0.7 21,333 - NOLOHH_24360 0.53 +0.4 21,333 - NOLOHH_24360 0.53 -0.6 21,333 - NOLOHH_24360 0.53 -0.1 21,527 - NOLOHH_24365 0.15 +0.5 21,613 + NOLOHH_24365 0.37 +0.4 21,613 + NOLOHH_24365 0.37 -0.4 21,614 - NOLOHH_24365 0.37 +0.2 21,667 + NOLOHH_24365 0.50 +0.4 21,680 - NOLOHH_24365 0.53 -0.5 21,726 + NOLOHH_24365 0.65 +0.7 21,811 + NOLOHH_24365 0.86 +0.0 21,812 - NOLOHH_24365 0.86 -0.6 21,812 - NOLOHH_24365 0.86 -0.2 21,812 - NOLOHH_24365 0.86 -0.0 21,820 + NOLOHH_24365 0.88 +0.3 21,972 + +0.3 21,973 - +0.6 21,973 - -0.5 22,072 - NOLOHH_24370 0.34 -0.2 22,143 - NOLOHH_24370 0.54 -1.5 22,264 - NOLOHH_24370 0.88 -0.6 22,309 + -0.5 22,517 - NOLOHH_24375 0.57 -1.6 22,625 - -0.1 22,866 - +0.3 22,866 - +0.0 23,057 - +0.3
Or see this region's nucleotide sequence